MmuEX0052687 @ mm10
Exon Skipping
Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33450287-33468532:-
Coord C1 exon
chr2:33468433-33468532
Coord A exon
chr2:33464914-33464974
Coord C2 exon
chr2:33450287-33455123
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTGTATCCATTCAGACT
3' ss Score
8.26
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTGGTACGGCAACGGGGACGCTCCGGTAGGCTGGAGCTACGGGCGCGGAGCCGTCTGAAG
Seq A exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
Seq C2 exon
CACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACGAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCGCACAAAGCTGTTCTTGCCGCCAGTTCTCCCTACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCCGATGTAATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTTAGCTACACAGGACGCCTTGTCATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCGGCCAGCTTCCTCCAGATGTGGCACGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACGGTCCTGTGTCAGAAGCTGAACCACGGCAGTGACCACCAGTCTCCCAGTAGCAGTAACTACAACGGCCTGGTGGAGAGCTTTGAGCTGGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.343
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=22.4),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGCTGGAGCTACGGG
R:
GGCGCTGCTGGTTTAGTTTCT
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types