RnoEX0100541 @ rn6
Exon Skipping
Gene
ENSRNOG00000017017 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:RGD Symbol;Acc:1310287]
Coordinates
chr3:12493179-12509690:-
Coord C1 exon
chr3:12509206-12509690
Coord A exon
chr3:12505486-12505546
Coord C2 exon
chr3:12493179-12494605
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGTATCCATTCAGACT
3' ss Score
7.96
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGAGTTCAAAGCCATCTTGGAATTTTATTACTTTTTCTTTGGGGGACTGGGGAGGAGTGAGCGTTCGTTTACCATAGTTCGCTTTTGAGGTTAGCATATAACTTGTAAGAGTTAGTCTTCCACCACGGGCTCCAGAGATAGTACCCAGGCCTGGCGACGAGCACCTTTATACGCTGAACTATCGATTAGGTTCAAAGAGCTACGAACTACGAACTAGCTTCGAAACCATTGCGCAGGCGCCAGCCCCTAGCGTGCTCTCCTGAAGACCCGCCCAGAAAGGACTCCTGGAGCATACGCACACCACAGCGTCGCTGACACGCCTCCGGAAGCACTGGCAGTTTCGGGGGCGGGATCAGAAAGCGTATCCGAGGGGCGAGAGGCTCGGGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGCTCCGGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAG
Seq A exon
ACTGCTCTTCGATGGCCATGACATAAGGAACATTATCCTGGGAACACAACTTTGCTCTCGG
Seq C2 exon
CACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTTAGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCAGCCAGCTTCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACAGTCTTGTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAGCAGCAGTAACTACAATGGCCTGGCCGAGAGCTTTGAGCTGGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017017_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.385
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=22.1),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTACGGCAACAGGGAC
R:
TCTGCAGAATGGTGCTGGAAA
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]