HsaEX0072166 @ hg19
Exon Skipping
Gene
ENSG00000169155 | ZBTB43
Description
zinc finger and BTB domain containing 43 [Source:HGNC Symbol;Acc:17908]
Coordinates
chr9:129567121-129600489:+
Coord C1 exon
chr9:129567121-129567210
Coord A exon
chr9:129571072-129571194
Coord C2 exon
chr9:129594766-129600489
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGTTACTCTTCCTTCCAGAAG
3' ss Score
9.24
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CGTAGTCAGTCCCTAAAATTGACCCGCTCCAGAGTGTACTGCGCAGGCGCCCGCTACCTCCGCGCTCTCTCCCGACGCCCAGCTCAGACG
Seq A exon
AAGTCAATGTGATTTTAATTTGAAGCAAAACTGAAATGGGTTCTTCTTCCTCATTCTATTCATGTTGCTTTTTGATGGCCATGGCATAAGGAACTCTATCCCAGGAATACAGCTTTGCATTAG
Seq C2 exon
CACCGAACAAGATTTGTGATGAAATGGAGCCTGGAACAAACTCTTTTCGGGTAGAATTTCCTGATTTTTCCAGCACCATTCTACAGAAACTGAACCAGCAGCGCCAGCAAGGACAATTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCGGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAGGTACTCCTGAAAAACAGCAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTCCTATCTAGTTATACAGGACGTCTAGTAATGCCCGCTCCAGAAATTGTTAGTTACTTGACAGCGGCAAGCTTCCTCCAGATGTGGCATGTGGTAGACAAATGCACTGAAGTTTTAGAGGGAAACCCTACAGTCCTTTGTCAGAAGCTAAATCATGGCAGTGACCACCAGTCACCAAGCAGCAGTAGTTATAATGGCCTGGTAGAGAGCTTTGAGCTGGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169155_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=22.4),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCCGCTCCAGAGTGTA
R:
CAGCAAGAACGGCTTTGTGTG
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)