RnoEX0100542 @ rn6
Exon Skipping
Gene
ENSRNOG00000017017 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:RGD Symbol;Acc:1310287]
Coordinates
chr3:12493179-12505546:-
Coord C1 exon
chr3:12505486-12505546
Coord A exon
chr3:12502775-12502863
Coord C2 exon
chr3:12493179-12494605
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTCGCATTAACTTTTCCTAGGGA
3' ss Score
4.88
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ACTGCTCTTCGATGGCCATGACATAAGGAACATTATCCTGGGAACACAACTTTGCTCTCGG
Seq A exon
GGAGATGCCAACAAACGTTTATTCATCCCAGATAGGGCACCAAGGACAGAGCAAAGTACGATTCCACCAAAGTCCAACTTGTCGAACCA
Seq C2 exon
CACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTTAGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCAGCCAGCTTCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACAGTCTTGTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAGCAGCAGTAACTACAATGGCCTGGCCGAGAGCTTTGAGCTGGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017017_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.310 C2=0.385
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0065126=BTB=WD(100=22.1),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCGATGGCCATGACAT
R:
ACATAACTGTCCTTGCTGGCG
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]