MmuEX0052688 @ mm10
Exon Skipping
Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33450287-33464974:-
Coord C1 exon
chr2:33464914-33464974
Coord A exon
chr2:33462266-33462357
Coord C2 exon
chr2:33450287-33455123
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTTGCATTAACTTTCCCTAGGGA
3' ss Score
6.58
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
Seq A exon
GGAGATGCGAAAAAACGTTTATTCATCCCAGATAGGGCACCAAGGACAGAGCAAAGTACGATTCCATCATCAAAGTCCAACTTGTCGAACCA
Seq C2 exon
CACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACGAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCGCACAAAGCTGTTCTTGCCGCCAGTTCTCCCTACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCCGATGTAATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTTAGCTACACAGGACGCCTTGTCATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCGGCCAGCTTCCTCCAGATGTGGCACGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACGGTCCTGTGTCAGAAGCTGAACCACGGCAGTGACCACCAGTCTCCCAGTAGCAGTAACTACAACGGCCTGGTGGAGAGCTTTGAGCTGGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.343
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0065126=BTB=WD(100=22.4),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCTTTGATGGCCATGG
R:
ACATAACTGTCCTTGCTGGCG
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types