RnoINT0167002 @ rn6
Intron Retention
Gene
ENSRNOG00000017017 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:RGD Symbol;Acc:1310287]
Coordinates
chr3:12493179-12502859:-
Coord C1 exon
chr3:12502775-12502859
Coord A exon
chr3:12494606-12502774
Coord C2 exon
chr3:12493179-12494605
Length
8169 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AACTTTTCTTTCTCTTGCAGCAC
3' ss Score
11.61
Exon sequences
Seq C1 exon
ATGCCAACAAACGTTTATTCATCCCAGATAGGGCACCAAGGACAGAGCAAAGTACGATTCCACCAAAGTCCAACTTGTCGAACCA
Seq A exon
GTGAGTGTATCGGGCTTGTTTACAGGGAGTGGGTGAGGGGTTGCTTACAGGACACGGGTAAGTTCCACTCCAGCATGGCCAATGACCTCAAGGAAGCAGCCTTATGGAGTCCCCTCTCACATCCTATAGTTCACTTGGGGAGTGAGGGGTGGGAGAGCATGAGGGAGAAATAGCTGAAGCCCCTCCCTCGATGGTCTTGGACCCTCCCTCATTCATGTGCTAGGGAGTGTCAACCATAGTCCTGTTTGTCACTGTGTTGTTTTGCTTGTTGTAGCCATGGCTACCCAGCCAAAGTATTTCCTACTCCAAAATGATACAGTACCCAGTCACAAACCTTCCCAGTTGGCAGTTGGGTGTAATCCCAGCGTTCAGGATGCTGAGGTAGGGGGGATCGAGAGTGTGAGGCTTTCACTAAACAAAACTAAGTAAATGTATTCCAAAAAGAAAACAACCGGACATTGGCACCTCAGTTTACCTTACATTATTCTATAAATGATTTAATAAAACAGTTCATGGGCTGGAGATGAAACCTGAAGATGCTGGCCTAATACATGTGAAGCCCTGGGCTTAGTCCCTGGCTGTCTTAAGCCCATGCACATTCGGAGGTCTCTTCCCCCCCCCCCCCCCCCCCGGACTGGGGACCGAACCCAGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGAGCCAAATCCCCAACCCCTCGGAGGTCTTTTTTAGTATAGTCACATACTTACGCGCATCCGTCTCCACAACTGAACTGTAGGAGTTCTGATCTTCCTACAGGATACCCAGCTGTTCTTCAGGCTGGGGTGGGGTTTAAACAGGGTTTCTCAGTCCTAGAATTTGCTTTACAGACCAGGCTAGCCTCAAATCACAGCGATCTGGCTGTATCTGCCTCTGCAAGGATTAAAGGTGTACATGGGGCATCCTGACTGGCAAGATTCTCAGTTACTAAGCACTCCCTGCTTTTCTCTACCTCTGACTGCTTCTGACAGGCACTGATCACTGTCTGTGTTTGAACTCAATTGTAATGGAATGTAATTGTGTGGACTTTTGTGTTAGCTCTTCCCCGCCCTTCCTATACTCTCAGTCTCCCCTGCCCTCTCCTGCCCTCCTCCTCCTCCCCGTCCTTCCTCTCCCCCACTGGTCTCCCCCACTGGTCTCATCCTCCTCATTCCCTTGTTCTTTATTGTGCTGATTGTAAAACCCGGAGCTTGCTGCATGCTGGACCAGCAGCTGCCTCAGCCTGGCTTCTTCCTAGGGTTCCGGGCCCTCCAGGTTACTGTGCTCTTTCTTCCTGCCAGGTAACCTTTCAGATGGATGTGCTGTAGTTTCGTAGTTGTCCCTCGACACACACTTTTGTTGTTTGAATTGTTTCTGCTTGGGCTTTTCCGTATGCTGCTGCTGATGGACACACGTGCTTTGGTGTGGACGTTCTGTGTTCTCTTCTGCTGAGTATGCTTAAGAGTAGAATTGCTGGTCTGTATCCTTGTGACTGACTGTCTGAGAAACTCCCAACCCCCTTTCTGCAGCTTTTATACTATCTCCATGCCTACCAGCAGTGTGTACAAGGGTTCTGTTCTCCACAGGGCACCACTGACAGTTGTTAGTGTCTCTTATTTTTCTTGCCAGCTTGGTGGGTGAGAAAAGGGTGCCTGTGGTAGTGTTCATTGTTTTAGGGCTGGGGGCAATGCGTGGGCTTGGAACCAGGTGTCTCGAACATGGCAGGCTGTTGCTGGACTCTGTTCACGGGGGTCTTGTTCTCTGGAGAAAGGCCTTTTGGAATCTTTGCCCTTTCTTTTCACCTGGGTTGTTTACTCGGCTTTGTATGCACTCAGTTCAGGTTATCATAGTAATATGATATGCAAATACTGATTCGAGTGTTGTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTACGCACTCTACCACTGAGCTAAATCCCCAGCCCCTTGTTTTGTTTTTTTTGATGGTACCACTATGGTTCACTCACACTCCTAATAGCTTCCTGCCGCCCCTCCCCTTAATTCTGTAAATCCCATCACTTTTCTCTAGACATACTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGGTAAATCCCCAACCCCTAGACATACTATTTTATTTCTCAAACCCTGACTACATTTGATGAGGCTTTCCTTGCAGTTAGCCCCAACTTCAGGCCCCCTTCTGCCTTAGCCCAACAATATGTTAACCTCACAACATCTTATTGTGAGATACTTGGTGCTGCCTCAGTCCCGTGTTGTAGTATCATTCTGTTCTGTCGCTGTGACAAACCCTGTCTAGACGTAATGGGGGAAGAAAGCTTACACTACCAGGTCACGCTCCAACCAGGAGGAGAACGCAGGGCAGGAACCGGAAAACTGCTTATGCTCATCGGTTTACTGCCTGGCTCAACAGGCTTACGCTCTGGTAGTTACACAGCCCAAGACTTTCTGCCTAAGGATGCTAGCACCTACAGTAGGCTGGGCCCTCCTACAGCAATTAGTCATCCAGTCACCCACAGCCATAGGCCAATCTGACTTAGGGCTCTCCTCTCAGCTGGCTCTAGGCTGTGGAGACAATAAAACCTAACTAGGACACAGCCTCTAGCAGACAGGATGAGATGTTACTGCTTCTCTGAAATCGGTGCTGCCCTGCCAGGATTGCCGGGAGCAGGAAGTGGAGTTGCTGGTCAGGGGTATCTGATTTCTTAAAGCCTGTGGCTCACAGCTCTGGGATCTTGGAGTTCAGATCATTTTTCTATCACTTGGATAATTTTAGTAAATGCTTGTTTTGTGAGAAGAATGAGAGTCTGTCTTGATGTCTGGTAACTCAGACTTTATAGTGACTGGACCCATGTGCAGCCCCACCTTGGCTTCTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCCACCTTGGCTTCTTAAGGTGCCAGGCTTTGCCTTGAATGACGGTTGGAGTGTTTGTCTCCTCTGCTGGGTTACGACCTGTAAGAATGATAGTGTTCTTTAAAACATTTTTTTATTAATTTTTATAGACACTGTAGCTGTCTTCAGACACACCAGAAGAGGACATCAGATCCCATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATAGCTAGCCTTGCGTTCTCTATGTAGCTAAGGATGACCTTTTTTTTTTTTTTAATATTTATTTATTTATTATGTATACATCATACAGCTTTCTGTCTGCATGTGTGCCTGCAGGCCAGAAGATGACCCCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTCACATGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCAGTAGTGTTCTTCTTGATAGTCTTCCTCACCCATACTTTGCATGCTGCTGCTTTATTGACTTTTAGTGAATCTTGGAACTGATATTTTTTTAGCCAGTTGAAACAGCAGCTGTAGTTTAAACAGGCTACAGCCACTTCTGAGTGTTCACAAGGTCAGAGATTACAGAGCAAGGCTACATCCATCCATCGTAAGGGACAGGGTCAATTACCACCTTGACACAGCTAAACAAGCATGGCATCACATATTTACTTTTGCCCTCTGGTGAAATGTGTGATCTTCATTTAACTGTTGGTTGTTCTAGGCAGTCTCATGTAACCCAAGTGGGCCTCAAACTCACAGTCCTACCTAGGCCTCTGTGCTGGGCTTATAGGGGTACCCCTCTGTGCCCAACTTTGACTTGACTGTGAGTCCAGACGCATTAACTACAGCAGCGTTGCAGAACCAGCACTGCAGCCATCCAACAGGGGTTCCAGTCCCCTGTGGCAGACATTGTCTCCTTGATGGCAATCCAGGAAGCTCAAGGAACATTTTATTAGAATGGGTGGGAGAACGGGACAGGTAGACTTGGAAACTGCTGAAAGGGAGGCGATGAATAAGAAAGAGGAAGGGTAAGAAAGCTCTGGATCGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTTGATTCCCAGAACCACACAACCATCTGTATTGGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGGCAGTGTACTTATATATAACAATAACTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAACAATAACTTTTTTTAAAAAAGCTCTGAGTCAGAGCAAACATGCTTTGAATTTCACGGATAGAAAAGTAGGTAAAAGAAGGTAGAAAAGTAGGCAGGCTGTTGGGAATTCTGTAGCTCTGAGGGAGGAGCGTTTATGCTGTGTATATTGTCTCTGTAAAAGGTAATTCTTCGTCTCCTCATCTCCTTAGCATATCTTCAAGTATATCCGCTTCCCTGTGGTGGTGATCTCCTGGCAAACCCAGTTAGACTGAGTATTAAAGGAAGGGACAATAGTCTGTAATGTTTAGTGTCTTGCCTCCACCCATGGCCAAGGTTTTATTGTTTTAATCTTGAGGTAGTAACTAAATCCCAATACCTCCACCCTCTCCTCTTTCATATGATGTTTTAAACCTGTAGGAGGGCCAGTTGTAATGCTTCCCTACCTTAAAATGCGGATATTCTCAGTGTGGTCCAGAGCTGATCTTGAAGGGAGGCTGTCCTCCAAGTAGCAATTCTGTGATCACAGTGCAGCTATCGTGATAACACCCTCCTGCTTCCATTCCAGCATTGTTCTTGCCCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCACTCTACCACTGAGCTAAATCCCCAGCCCCTCTTGCCCCTTTCAAACCTGCACTCTACCGTGGGGAGAGGCACCTAGAGGCTCTTCACCCAGACGCTCTCAGAGTTTACACGGACACCTGGTCACCATGCAGACTCATTCCCTTTTACAAACGAGGCACCTAAACGGTCTCGTGCTCTGTTAAGTTATTATGATGTTGTGGGATATAGAAAGCCAGAAAGTCATGCTTTGTTCAAACAGCATGGTCTTAGCTAAACATTATTAGTGACTGGGCCAGCATTCTAGTCTCCTTGGAGGAGGCAGCATGAGGTGATAGGAAAAACCCCGAGGCCTTTGGAGTTAACATTGACCTGGTTTTAATCTCTCTCCTTAGTTCAGACAAGCTTTTAACTTCAGGAAAGCTTGAAATAACTGAACTTAAGAACATCAAGCCCTGCGTTTGCAAAATTACCTGGAAGGACTTAGGAAGGGGCTGGTTTGGAGCTCAGCTGCAGTCAGTCACCTGGTACAGAGCCCTGGGAGAAGAGGAGGGAAGGGTGAGAGCCAGGCCTAGTGGTGCACTCCTTTAGTCCCAGCATCCAGGAGGCAGAGGCAGGCAGGTCTCTGCATTTGATGCCTGCTCTATAGAGTTTCAGATTATCCAGGACTACAGGGAGAGAGGGCCAGGGAGAGGAGAGAGAATACTGTGCTGCACTTGATAAGAACAAGCAATTGTTAAGAACACCTGAGTTTCTTCACTTTGTCATCTCTCCTGCCTCTCAAGCATGACTTGTGAGGAATTGAAGGATGATACAAGGGTTATAAGAAAGATTTTTAAGAACTACTGTAAATGATGGCTCAGTTGGTGCACTGCCCAGGAAAACATGAGGACCTGAGTTCAAACCCCAGCACTTAAGCAGCTGGTGCAGTGGTGTGTGCTTGTAGTCCCAGCATTGGGAAGGCAGACAGGGTGGGTCTTTTGGGACTGGATGGCTAGCCAACCTGGAGGTTGTCTTAAAATCACAAGTGGAGGCCCCTGAGAAGCAGATCAATGCTGACCTCTAGTCTGCCTGCACAGAGGATCCTACCTCCACACACTCACATTAAAAAACTCATACAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAGAACCAAAAAAAAAAAAAAAACCTCATACAAACTAAGTTCTAAAGAAGAGAGTGGGAAGAGTGGCTTTCCATCGTTGTTTGCATTGTCTGGCTCTTTGTATGTTACTTAGAAAGTTTGGTATTGATGATTGGTTTATAGCATTAGATCAGGGTGAAGCGTGGCGATGGTGTGTGTGCGCGTGCGTGTGCGTGTGTGNNTGTCTGGCCACCACACTCACCGCATTTACATGGTGCTGGGGACCTGAGCTCCCAGCCTCATACTTTTGTTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCTTTTTTTTTGGAGCTGGGGACCGAACCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCTAAACCCCTGTGTGGAACTCTTAATGCAGTGTCCACCAGATGTTTCTGGTAACCAGGGACAGTAACGCAACTCCTAGTAGCGTCAATAAGTCCTTTCCTGTAGCCTATACGAAACAACCAGCATAGAACAACCTGCCTTTGTCTTCCTCAGAAATCCTTAAGGACNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGGTGTGGGGAGAGTGCATGCTCATGTGGCATGTGTGAACACGCAGTTGAGGGGGCTGCTTACCTCAGCCGACATGCACCTTCATCTCATCCAGACCGAAGCTCACCCATTCCGATAGCTCCCGGGATCCCGCACCAGCTGCCAGAATTACAGGGCTGGCGCACCACACTCACCCGAGCATTTACATGGTGCTGGGGACCTGAGCTCCCAGCCTATCTGTTGTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCTTTTTTTTTCCGGAGCTGGGACCGAACCAGGGCCTTGCGCTTCCTAGGTAACGCGTCTACCACTGAGCTAAATCCCTAACCCCTGTGTGGAACTCTTATGCAGTGTCCACCAGATGTTTCTCCAGCTAACGTACATGATCCCAAGAGCGACTCAGCCGCTCAGCCGCAGTGAGCGGTAGGCTAAAAGAGCAAATCTGTCATTTTCCTGACTTGACTGTAGCACCATCTCCCTCAGTTCTTCCCGGACTCAAGTCCAGTGGTCACCTATTGTGTCTGTACATGTGCACACGTGCGAGCTTGTATGTGGAAGCCAGGAGTCATCCTTCTGTCCTCTGCTCTTTTTTTGAACTTGGAGCTAACTAGATTGTCTAGACTAGTTAGCCAAGAGCTGGGGTGAGGGAATCCTCCTGTCTTCACCCTGAAGCATTAGGGATTGCAGCCATTAGCTACCATACCCACCCTTTTACCGGCCCTGGGGAACCAAGCACTTGTCCCATACTTATGGGGCTGTGACCTAGTTCATTCCTGTCAAAGAACCTTTGCATGGGCATTTCTGTCTTCCTACAATTCAGATCTTCTCTCTCTTTTTCCTTTTCTTTTGGAGTATACATGAGGGTGGAGCTTAGAGAACTGTACGTGCTAAGCATACACTCTACCCCCAGCCACACCCCACCCTCCCACAATCCTGTTGTTCCTTCCTCTAGTTTTGGTAAATGTGGGAGTCCAGGGGTTACGTTGAGTTACAAGATTCGTGCTTGTTTTAGTTAGAAATGGTTTGCTTTGCTCAGAGGACTTGTACGCTTGGAGATACGTCCTCAGTAGATTCTGGCTCCTTGCCCACAGTCAGGGTAAAATGGAGAGTTGCTATGTGGGTAGGGGGTGGCTCTTACTTTTGGGACCCTCAGCTCCTACAGCTCCTACAGTCTCAGGGGATGGACGCCCATGGATGAGTGCTCAGAGGCAAAGGGACTTGCTGGAACTTGGGAACTTGCTTTGGTGTTTTTAGTACTGGGGGGAGGCTGGAGTTGGTATTAACTTTTCTTTCTCTTGCAG
Seq C2 exon
CACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTTAGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCAGCCAGCTTCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACAGTCTTGTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAGCAGCAGTAACTACAATGGCCTGGCCGAGAGCTTTGAGCTGGGCTCTGGGGGCCACACTGATTTCCCCAAAGCCCAGGAGCTGAGGGATGGCGAAAACGAAGAGGAGAGCACCAAAGACGAGCTGTCATCTCAGGTCACCGAGCACGAGTATCTGCCCAGTAACTCGTCCACGGAGCATGACCGCCTGAGCACCGAGATGGCCAGCCAGGACGGGGAGGAGGGGACCAACGACAGCACAGAGTTCCACTACACCCGGCCTCTGTATAGCAAGCCCAGCATCATGCCTCACAGGCGCTGGATCCATGTGAAGCCTGAGCGCCTGGAACAGCCTTGGGATGGCATGGATGTGCACGCAGCCTACGATGAGCACCAGGTCTCCGAGTCCGTCAACACCATGCAGACAGATCACTCGGCCCAGCCTTCGGGAGCGGAGGAGGAGTTCCAGATTGTGGAGAAGAAAGTGGAAGTAGAGTTCGACGAGCATGCAGAGGGCAGTAACTACGACGAGCAGGTGGACTTCTACGGCTCCTCCATGGAGGAGTTCTCTGGAGAAAAGTTGGGGGGCGGTCTAATTGGACACAAACAGGAGACTGCCCTTGCAGCAGGCTACAGTGAGAACATTGAGATGGTGATGGGGATAAAAGAAGAGGCGTCCCACTTAGGATTCTCAGCCACCGACAAGCTGTATCCTTGTCAGTGTGGGAAAAGTTTCACGCACAAAAGTCAGCGAGATCGACACATGAGCATGCACCTCGGTCTGCGCCCGTATGGCTGCAGTGTCTGTGGTAAGAAATTCAAAATGAAGCACCATCTCGTGGGCCACATGAAAATTCATACCGGCATAAAGCCCTACGAGTGTAATATCTGTGCAAAGAGATTTATGTGGAGGGACAGTTTCCACAGGCATGTGACTTCTTGTACCAAGTCCTATGAAGCTGCAAAGGCTGGGCAGAATACGACTGAGGCTAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017017:ENSRNOT00000022814:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=WD(100=22.1),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]