DreINT0177280 @ danRer10
Intron Retention
Gene
ENSDARG00000045983 | zbtb43
Description
zinc finger and BTB domain containing 43 [Source:ZFIN;Acc:ZDB-GENE-060526-378]
Coordinates
chr5:4497806-4499886:-
Coord C1 exon
chr5:4499870-4499886
Coord A exon
chr5:4499039-4499869
Coord C2 exon
chr5:4497806-4499038
Length
831 bp
Sequences
Splice sites
5' ss Seq
ACGGGCCTG
5' ss Score
-11.98
3' ss Seq
GTCTAGACTTTGACGTCACCATG
3' ss Score
-19.3
Exon sequences
Seq C1 exon
AAACGATCCGGGAAACG
Seq A exon
GGCCTGGGCACGGTACGAATGGCATAGTGTGAGTAGGCCCTCAGAGAAGATAGACTCCAGAGGAGGAGAGGAGCAGACCAGGAAAAGACAGGCCAGGAAAAGAGAGGGCAAGGAAAAAAGACAGAGCTCGAGTTTACCACCTATTTTGTATCTTTCTTGACCATGTGACTAAAGCCATTCAAGACATTCAAACTGACCAATCAACATATGACCACATCATAAAACCCCCAAAGTCCACACAACAGGCCCTGATCTTATCAGTATCTGCCTTTGAAGTCAGTATGGACCTTCTTGAGTCAAAAAGACATGTTCTGTCATATAAACAAATGCACATGATAATTCAGCCTCTTACAGCACAAACTTTTAGTAATTTTCGCGTGAAACTGAGCTTTGCAGAGCAACAAATGTGTAAGACTGGAAAGGGCGGTATATGATGGAATAATCATATCATCTCCATTAATGTTTTTTCATAATCGTTAGAAGCCGAAATCAAAATTTTCAATTATTTGCACAGCCCCAATAGCGGGTTAGCTTGATCTCTAATGTGCTGAACTTTAAATGTTGATGCTAGTTTAATATGTAATAGCATAACTTTACTCCGATTATGGAAATATGGAAAATCTTTGGTCATTTGAGTGAGATGCTAATGGTCTAATCCGATTCAATGATCATATGCTAAGCTAAACTGAAAGTGCTCCTGCCAGACCCAGAGATCAGCTGGATTTAACTGGAACTGTCTTACTTGAGAGCTGTAAAATAACCCTCTTATTTAAAATAATTAAGTGCAGTATCCTTTCCTTTTTCTCAGAGCGTCTAGACTTTGACGTCACC
Seq C2 exon
ATGGAGGCTGATGCAAACTCCTTCCACGTGGAGTTCCCGGATTTCTCCTGCTCGCTCCTGAAGAAACTGAACCAGCAGAGGCAGCGTGGCCAGCTCTGCGACCTCATCGTGTCCATCGGCGGCCATCAGTTTCGCGCCCACCGCGCCGTCCTGGCCGCAAGCTCGCCGTACTTCTGCGATCAGGTGCTTCTGAAGAACAGCGCTCGCGTGGTGCTCCCGGACGTCATGCCTCCGTGCGTTTTCGAGCAGCTCCTCTTATCCTGCTACACCGGAGGACTTTCGGTGCCGTCTGGAGAAGTGGTGTCCTTTCTTACAGCCGCCAGTTTTTTACAGATGTGGCATGTGGTGGATAAATGCACCGAGCTACTGGAGGTTGGAAACAAGAAAAACAGCAGCGGAGGGAACTTCGAGCACAGCTCATCCCCGAAATGTGACGTGTACGAGGATAATATTGAAGATCTAGTGGATGATGGCATTACTATTCCTGCCTTGGAAAGCGCCGGATGCTCGTCTCCTGATGCGCAGAGCAGCGAGAATGGATCGGACGCAATGGAAAGCCACTGCTCTAGACCCGCGTATGTGCCGCCGAGCATCATGGGACATCGAAAGAAGGTGCACGTTAAAGCGGAAAGGCAAACTCGGGAAGCCTGCGGTGGGTTGTTTGGCTCAGAACACACTGCGAATGATTCTGACGAAAACAACGGCAACACCGTCGAAGATTGTTTCGACGAGAAGTTAACAGAGTGTCTGGATCGGGATTGCACTTATGAAGAGCCTCTGGATTTCTACGGGAGCTCCATGGAGGGGTTTTCTCAAACCGGAGACGAGCTTTCTAATCCAGAGTCCAAGGAGAAACTTCAGGCGGATGGGAATAATACAGATGGTCCTAAAGATGAATCTCCTGCCGACAGTGAGCAGACGTCCCACTCAGGGTTTGCATCGGTGGTTTATAAGCTGTATCCGTGTCAGTGCGGCAAAAGCTTCACGCATAAAAGTCAAAGGGACCGGCATATGAGCATGCATCTGGGTCTGAGGCCGTTCGGTTGTGCCGTCTGTGGAAAGAGCTTTAAGATGAAGCATCACCTGGTGGGTCACATGAAGATCCACACGGGGATTAAACCGTACGAGTGCAGCTTGTGCTCCAAGCGCTTCATGTGGAGGGACAGCTTCAACCGGCACACCTCCACCTGCGCCAAAGCCCATCAGACCCGACGGGCCTCGCAGACCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045983:ENSDART00000134585:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=25.3),PF061476=DUF968=WD(100=28.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]