GgaINT1030337 @ galGal4
Intron Retention
Gene
ENSGALG00000000934 | ZBTB43
Description
zinc finger and BTB domain containing 43 [Source:HGNC Symbol;Acc:HGNC:17908]
Coordinates
chr17:10246461-10251303:+
Coord C1 exon
chr17:10246461-10246493
Coord A exon
chr17:10246494-10249507
Coord C2 exon
chr17:10249508-10251303
Length
3014 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTGTTTGCTTTCTTTCAGCAC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGCCCACTATGAGAGAGACTCTGAGGCCCCCAG
Seq A exon
GTGAGAGGCTGTCTGAGCGTAGGCCGCGGGAAGCCGCGAGGCTGAGGGCCCGGGAGGCGAGTGAGGCCTTCTCTCCCCTGCCGCCCCCCCTCCGCTTCCTGCCGCGGCTGCTGCCTCACGCTGCTTCTGCGTTTCTTTCTGTTGGGGAGGCGCTCCTTCAAGGAGCCGGGAGCCGGCTCCTGGGCCCACTCTGCTCCTGGCTCTTTTCTCGGCGGCGATGAGCTGTGGGCTGGCCGTGGGTTGCGGTGCTCTCGCGGCTGTGCCCGTAACGCCTCCGCGTGGGCTCCCCGCGGTGTCCCTGCGGATACCTTAACGCTCTGAGGTGCTGCCTCGGTGGGTGTAGGGAATGAAGGGGATTTCTTCGGAATCTTTATGGAGAGCTGAAGTTACTATGTGCTGGCTGTTCACGAAATAACTTTATTTTTAAGCATAATATGGGCATAATTTTTATTTTAAGCGTAATATGACCCCTGTGTTTCAGTATTGCAGCATGGAAATGAAGCATTTCCTATTAACTGCACTAGAATTTTTTTTTTTTTTAATGAGCAAGAATTTTAAAAAAATGCAGCAACTGAGCAGGCTGTAGAAGGAGAAACTGAAATCTCCAGAGAAAAAAATGGAAGCATTCTTGAAGTGTGTGGCTTTACTAACAAAATACTTTGCTTATGTTTTGATAGCTTTGTTTTTTTAATGAGAATTTAAAACTTATAAAAGAAAGGCTGCTCCCACCTGTGACTGTTTCTCTGATGAATTACCATGCCAGGTACTTGCTGATACCTGGCAGCTTAGACAAGCAGAAATTATAGAGATTTCTTTGTAAATTGAGGCCATATATTTCCTAAATTGTTATTTTTGCTTTTTTTTTTTTTTTTGTAGGTGAGTATGGAAAAATAGAATCTTAAATCTGAGAATACTTTGAAAAGACATAAAGAACTGATGTGCCTGCATTTTTAAAAAGTCTTTTAAAAAATAAGCATTTCATAACATGTCCTGTGTGTAAGTGTCTGAAGTAGTGCCATAATGTTGTCAAGTGTTTTAAGCAAAGTTGAATGAAGAATTAACAACTGAACTTGCAGAGAGTATTACTTACATGTTTTAGGCTATTTCTCACTTAATACAACATGGTAATTGTCTAAGCAGAATGTTTATGTGAGGCAGTAGTTGTGGGAAAGGGGCTCTCTAAACTAATTTTCATATTGTAGCTGAGAATCTTGCAGTAGTTGGTAAGCACCTTCAGTTGAATCATTGCTTCAATTGGTAAAGCAGTGACAATTATGAAGATGTGAATGCTGCTGTATACAGGCAGTTTCAGTGCTAAGTTACAGAATTTTTAGTCATTTGACTGTCTTCCTCCTTAGTGGAAGGTTTTTTTTGTTTGTTTTTATTGTCCCCCCTGCTATCCAAAAGGGGGAAATTTGTGTAAGGTTTCAAGAAAGAAGGACACTTGTCAGAAACAGTACCTTTTTACTTCTGAATGTATTGCTATTGTTACTTACTGTTATAAATGATTTCCCTAGTAACAGGCTATTTTTCCCAGTCTGTTTTCTTCAGAGGTCTACATAAGAGAATCACATTGATGCCATACTTCTACTTTAAAAAAAAAAAAAAAAAAAAAAGGCATTTAAAGTATAATCTTCACAGTTCTGTAGAAGATGCTCACCTCAGCATTTGGCGAGTTTCAGCATGTATTTCTTGAAAGTTTTGGTGCTTTTCTGAGCCCATGCTCTCTCTTCTATGGTAATCTTATTCATCTTGATCTAAGTTAACCATAAATAATCTGTTTTCACCTGTGCTCTGTATGTTGTCATCCTTTTCTAGTTTAGGAACTTTAAAGAAGGAACAGTGAGGCTTTGGGAGAGTGGAGGAAAGATGTCAACAGTATGAACTGGAAAACATTTGATCAGTCAGGAAGGGATTATGTAATGGGTGGCTGTTGATTAAATGTTGATTTACATAATCACTCCTGTGTAGACAGTATTTTGTAAACACACACTGCTGCTTTCCTTGCATTTAGTAGTCATACCATTGTGCCAATGTGCCAGCACTTGAACGTAGTGCATCTAATAAATTTTTATATAGCGGGTTGCATAATTATATATATTACACATTTATTATATACAAATTACATGCATTTATTATATACAGTATATAATTATAAGTACTACAGTTACTGTACAGACTCTGTAGAAGAGTTTCATAATCATATCTTCTCAATTCCATGTTTCCATGGAATCACTTCAATTTCAGAGTACTGCTTGTAATGTCTGTTCTATTTTTGTACCATATACGTGTACTTTTAAATCCTGTACATGTGTGCTCTCTGCTTATTAATTAGTATTCTTTCTTAGATGTGCAGCTCTATCTATTAAAACTTTCTCCTACTTACAAGAAGCATCTTTATGGGAAAAACTGCTTTCTACTTCATAGCTCTTTTGGACTTCCGTTATGTTCAGTTTACACATCAAATTGAAAAATTGCATGAACTTAGTTTATTCAGATAGTTAATATTGGTCTTTCATTGTTACACTTCAATTTCTGTTATTATTTCTGGTGATAACAGTATGCACATTCATATTAAACTTCAATATAAAATGAAACACAGGCATTTTAAAGAATGTTGTTATTAAATGATTGTCAGCTTTGTGATTGACATCTGAGTCATGGGAGTGTAAATATTAATATCTGAATTGCTAGCTGAGCTTCTGGTGTACAAGTGTTGAATTATTACAACTAAACAAGAGATATCTTTCTGTAGCTCCTGTTGTAGTGGGAAGTCTTCTTGAATAGAAGAAGCACAGCTAAATATGCTGGCATAGCAATTTGTGTCCTCAGTACAAGTTTCAGGAAAGAGAAAAATGAAATTGGGGGGTGGGGGGAGGGCAGAGTAGAAATATATCAGTGACATAAGTTCCAGAAAATGTTGGAGTGACTTCCATATGAGTTTATAAGGAAACTGAGAGAATAATACTTTACTAAGCAGAATTTCTGATCTTTTGTTGTTTGCTTTCTTTCAG
Seq C2 exon
CACAACACTAAATTTGTAATGAAATGGAGTCTGGATCAAGCTCTTTCCGAGTGGAATTTCCAGATTTTTCTAGCACCATTTTGCAGAAGTTAAATCAGCAGCGCCAGCAAGGACAATTATGTGATGTGTCCATTGTAGTTCAGGGCCATCTCTTCAGAGCCCATAAAGCTGTCCTTGCAGCTAGTTCACCTTACTTCTGTGATCAGGTTCTCCTAAAAAATAGCAGGCGAATAGTCCTGCCTGATGTGATGAATCCAAGAGTATTTGAAAACATTCTTCTGTCTACCTACACAGGTCGGCTGGTAATGCCTGCTCCAGAGATTGTTAGTTACCTGACAGCAGCAAGTTTCCTTCAGATGTGGCACGTAGTGGATAAATGCACTGAAGTGCTAGAGGGAAACCCAACAGTTCTTTGTCAGAAGATGAATCATGGCAGTGACCATCAGTCCCCAAGCAGTAGTAGTTACAATGGCCTTGCTGAAACCTTTGAACTTGGATCTGGAGGGCAGACAGAATTCCACAAAGTGCAGGAACTGAGGGATGGTGAAAATGAAGAAGAGAGTTCTAAGGATGAGCTATCATGTCAACTGACAGAACATGAGTACCTCCCCAGTAATTCTTCAACAGAGCATGATAGACTTAGTACAGGAATGACGAGTCAGGATGGTGAAGAAGGAACTAGTGATAGTGCTGAGTATCAATATACCAGACCTATATATAGCAAACCCAGCATCATGTCTCACAAGCGGTGGATCCATGTGAAACCAGAAAGATTTGAACAAGACTGTGAAGGTGTTGACAATCCTTACGATGAACATCAAGTTTCTGAATCCATGAATGCCATTCAGGCAGATCATTCAATTCAGTCTTCAGGTGTTGAAGACTTTCATATAGCTGACAAAAAGATGGAAGCAGAATTTGATGAACAGGCAGATGAAAGTAATTACGATGAGCAAGTTGACTTCTATGGCTCTTCTATGGAAGAATTTTCTGGTGAAAGGGCAGATGGAAATTTAAGTGCTCACAGACAAGATCTTATGATAGCAACAGGCTATGGTGAAGGCATTGAAATGGCTGCAGGAATTAAAGAAGAAACGTCCCTCACTGGGTTCTCACATGCTGATAAGCTGTATCCTTGTCAGTGTGGTAAGAGCTTTACACACAAAAGTCAGAGAGATCGGCATATGAGTATGCACCTTGGTCTTCGACCTTATGGGTGTGGTGTCTGTGGTAAGAAATTCAAAATGAAACACCATCTTGTTGGCCATATGAAAATTCATACAGGCATAAAACCGTATGAATGTAACATCTGTGGGAAAAGATTTATGTGGCGGGACAGTTTTCATCGGCATGTGACGTCTTGTACCAAGTCGTATCAAGCTTCTAAAGCTGAGCAGAGTACTACTGAGATGAACTGAGACATTAGAGCTTACATTTGTTCAGTACAGTAATGAAAATAAACTAATTATTCCAATAGTGTCTGGTACTTGCTATTGTGAAATTTAAATTCTCAAAAAACAAGTTTCAATGATTATGCTGGTGTGAGCAGACCAAATGTTTTATTTACCACAATTCTATTCCAGGTGGTGGGTGTGAAGTGGAAATGGTTAATCTGAAAGGTGCTTGCAAAATGTGTTCTGTAAGGTCTTTGTGACATTATTTGCTATCACAACAGTATTTAGAAGCCCTATTGTTTTCTGAGTCTTACAAATTGACAGTAGAACCTAGCTCTAAATTGACCCAAATTGTACAAGTATTTACATAAAGCAGGAATTCAAGTAGCCTTAAAGGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000934:ENSGALT00000001372:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=22.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]