MmuINT1035347 @ mm10
Intron Retention
Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33464914-33468532:-
Coord C1 exon
chr2:33468433-33468532
Coord A exon
chr2:33464975-33468432
Coord C2 exon
chr2:33464914-33464974
Length
3458 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTCTCTGTATCCATTCAGACT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTGGTACGGCAACGGGGACGCTCCGGTAGGCTGGAGCTACGGGCGCGGAGCCGTCTGAAG
Seq A exon
GTACTGCGGGGCGGGGAGGCTGGGCGCTCGCGCGGGAGGTCGCGGTCGGGGTCACGAGTGGCCGCGACACGGGACACTGCTCTCCCTCCGACGGCGGTGATGCGGGACGGCGCGAGTGACTCCGAAGCCCCGGCGCCCCGGCTTAGAGTCCTGCGGCCTCCCGGGCGACCTCTTGGCCAAGGTCACCCCGCGGCAGGTGCACCGCCGCCTGGAGCTCTTGGAGAATCCGCCCCCGGGGCGACCTCCGGGTCGAGCCACCCACGCACGAACCGACGCCGCGAAGGAGAACCTCGCTGCCCTGAGTTTCGCCTCTTTGTCAGACCGTTGTCACCTGTTTTGTCCTCACCTGGCCTCTTGTCAGCTGGAGTTTATACTTTGCATCTTTGGTGGTGACAACCTTTGGACTTTGTCTTTACCTCTGTCTCCTCCCTTGCCTCAGTGTTTTTTGACTCTGCTTCTGCCCCCTCGGGCCGCCCTCTGGTTCAGGGCCCGAAAGTCACACTGACTTCTTGGTCATTTGTCTGTCTGTCTCTCTGTGTGTGTGTGTGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCAATGTTGTGTTCTTGTTCTCTCCTTCCCAACTGAGTTTGTTTAGGCAGGGCGGGCCTTGCCTGGACCTCTGAGCCATGGAAGGTGACTCATGACCCTGTAAAACTCCCCTGGCCGGGCACCATTACCAGTGGCCCGATCACAGTCTGGTCTCAGTTCTGACAAGTGTCACCAAACCTAATAAAGTGTCAGGAGCTACTGCTTTCACGGTGAAGGCCCATCTCAGGATCTAGGCAGTGGTTTGCGCAGGTCTCCACAACTCTTTGCTCTTTCCAGAAACCCTGGGTGGCCTCCAGGGCTGTTTGGAGCTGCTCTGTTTAACCAGGCCAGCATCTACAGGCTTAGGAAGGACTAGACTTCCATCTGCCTCTGAGACCCTTAACTTAGCACAGTAGCAGAGTTCTAGGAGCAGTTTACTGAAGAACTTAGAAACCTAATAGGAATCCATTCCCTGCTTGTTTCCAAAGTATTGTCTGAGACAGAGACACCATAGGGAGGAACACTGAAACTTTTGGAGTGGAGTGTATCTGGAATAGACAGGAGATGAAACATATTTTATCAAGTGCCTGAGTCAAGTAGGCTGCCTCAGTGGATACAGAGTTTTAAGAGATGGAAAGAACGTTCTAGAAATGGTTTGTGCACAACAGTGTGAATGCTACATAACTAACTCTGGTTTGCAACATTTAGTTGAATCCTTTGTAGCAATGCAAGCCAAGCCCTTCCCAGCAGCAGGTTCAGCTGATGTGGAGTTCCTTTCAATCTTGTAGCAGCAGTTTTCCCCTCCCTCCCGGCCCCTCTGGAGTCAGTGCAGAGATCTACTGAGGGGCAGCTTGAGAAACACATTACCTTTGACATGCCAAGAGCTTGTAAAACTGGAAAGATACTCCTTATTAGAGTAGAAAGTGTTCTGGTCTTTTTTCACAGGCTAGGCCTTTTTAGTTTTCTTGGATTTTTTTTTTTTTTTTTGGCTTTGTTTGTTTGTTTCTGTTTTATAAAACTTACCTGCCTTAAGGTCATTTCCCCAGCATTTGGTTTTTTTGTTTGGTTTAGTTTGGTTTGGTTTGGTTTTTTGAGACAAGATCTCTCTATACAGACAGGATGGCCTCAAACTCTGAGATACTCTTGCCTCTACCACCTGAATGCTGGAATTAGAGACTTTTGCCCACATGCCTGGCTTCAAGCTTTGTAATATGCCTAACAGTTGACTTATTGTTGTGTTTCATTGACTCTTGATGCCATCAAGTGTTTTCTGTTCACCAAGAAAAGAAACAGTGCCTGGAGCAGAATTCATTCCCAGCACTGTGTTTCTTTATCCTAATTAAAAACACTTTGACTTAGAGGTTTAAAGAATAAAATCAGTGCACATTCAATTGGTCTTAAAATCAGAAAAACATAAACAAAGACCCATCAGTTAAAGTGCCCAGGAAAGGGATGGCTCTCCGAGACAATCCGAGCCCTGCTCTTTGAATACTGTCTGCTTCAGAGTTGTAGCAGGTCCCTTATTGGTGGAGAGGAGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGGTGTGAGGAGAGGAGGAGAACTATAGCAGACGACGGTCCCTTAGTTGCATCTCTAGTTGTTCCAAGTGGAGTCATCCTTTGTGTCATCAGAAACATTCATCGTGCCAGGAGTGCTTCAGTCATGACCTCAGTAGCCACAGCTGTTAAAACTGCAACATACATCCTGTCTAGTGTAGCCCATGGTACTTCCACCTCCCAAGAGCTGGGTTTTCTGTATGGCTGCCAGCTCCAGCTGGCAAAATCAGCTGACCTTCTGAACTGTAAGGAGTTGAGTGCTCCTGCAGGGCTGCTTAGCTATTAGCTCACCAGAACCCTCAGAGTGGGCCTCAAAATTTTTACAGACTTAGACAACGTGCTGCCACGGTTTCTTTCCCCAGCAGAAGTCCCTCCCTTCCAGGGGTGTGACACATATCATTAACAGTAAACTGAGGAAACTAAGTGTCCTTAGACTCTCGGCTGCTTTAAAGGCAGCAGGGCCTGACCAGAGCACTCTGGCCCAGTGTTGAGGTTTTGGGGAAAGGGGCAAAAAATGGATGGACCACTGGGAGAACCGGTGGGAAATGGAGGCCGTCCCCGGAAGCAACCTACTTCAGGGAGCTTTCTCCAGGGTTTCCATGCCATTATGAAAGGTTTGGAGATCGAGAGGGAGAAGCACCGAGGCAGATTATTCTTTGGGGTAACATGTTCTAGAAGAGCCATGAACTGCACAGATAATGTAGACACTAGTGTGGCAGGGTCTGAGGAGAGCATGAGAACTGTGGCAGACAGTCCCTTGGTGATGTAGAGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGATGGAGAGGGGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGGTTTAGAGGAGTGGAGGAGGGATGGAAATTGACAAGTTTCTCTTTGTCTCTGTTCTTTGGCTCTGGAGTTGGTTGTTGCTGGGAGTAACGGATGAGTAGTCACTTGTTACTAAGCAGACCTTTAGGTACTCAGTACGCATCTTTCCTGGCTGGCCATTCCTGGGTTTGACCAGGCAGGAAAGCAAGACGAATCTATAGAAGCACAACACTTTAGTTCAGGAATTGTCTCACAGTTCAGCCAAGATGGGGGAGAGGTACTAAATAGCCTGACCCTGCTCACACTGCCCAGTTTGACAGCCTAGGTTTGATCCCCCGCACCCAGGTGGTGGAAGAAGAGGACAAGCTCCAGCACCTTAAGTTTTCAATGTGATTTTTCCTTTCAGAACTGAGTGTGATTTAATTTAAAGCAAGACTGAGAAATGCATTCTCTCTCTGTATCCATTCAG
Seq C2 exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788:ENSMUST00000028125:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types