RnoALTA0045299-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017017 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:RGD Symbol;Acc:1310287]
Coordinates
chr3:12505486-12509306:-
Coord C1 exon
chr3:12509206-12509306
Coord A exon
NA
Coord C2 exon
chr3:12505486-12505546
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTCTCTCTGTATCCATTCAGACT
3' ss Score
7.96
Exon sequences
Seq C1 exon
GGGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGCTCCGGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAG
Seq A exon
NA
Seq C2 exon
ACTGCTCTTCGATGGCCATGACATAAGGAACATTATCCTGGGAACACAACTTTGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017017-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGAGAATAAGGCCTTCG
R:
AGCAAAGTTGTGTTCCCAGGA
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]