MmuEX0022012 @ mm9
Exon Skipping
Gene
ENSMUSG00000026879 | Gsn
Description
gelsolin [Source:MGI Symbol;Acc:MGI:95851]
Coordinates
chr2:35122340-35139629:+
Coord C1 exon
chr2:35122340-35122423
Coord A exon
chr2:35138171-35138241
Coord C2 exon
chr2:35139425-35139629
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAGTAATTGTCTATTGTAAGTTC
3' ss Score
0.94
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTACCACCAGCTTCTCTTCCAGTGCTTCAGCCGCTGTCATAGCATCTCCTCTCGGAGTGGCTCTCTCCTTGTGCAGCCTGTAAG
Seq A exon
TTCTTGCAGATACAGCGCTAGGAAAAGGGGAGTAATTCAGGTGTAGAATGGAAAAACTGTTTTGTTGCTTT
Seq C2 exon
CCCAGCACTATGGTGGTGGAGCACCCCGAATTCCTGAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTTGACCTGGTGCCTGTGCCCCCCAACCTCTATGGAGACTTCTTCACGGGTGATGCCTATGTCATCCTAAAGACTGTGCAGCTGAGGAATGGGAATCTGCAGTATGACCTCCACTATTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026879_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAGCTTCTCTTCCAGT
R:
CACAGGCACCAGGTCAAACTT
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types