BtaEX0016420 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019915 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr8:112591586-112611208:+
Coord C1 exon
chr8:112591586-112591673
Coord A exon
chr8:112609621-112609691
Coord C2 exon
chr8:112611004-112611208
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAGTAACTCTTTATTGTAAGTTC
3' ss Score
0.73
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTGGTGCTGCTAAGCTCTCGAGCCGCGCTTTCACCTTGGTGCCAAGCCCTTCCGACGGAGCCGCCCTCTTCACTCACAGCCCCACAAG
Seq A exon
TTCTTGCAGATACAGCTCTAGGAAAAGGGGAGTAATTCAGGTCTAGAATGGAAAAACTGTTTTGTTGCTTT
Seq C2 exon
CCGGGCAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCCGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGACCTGGTTCCCGTGCCCCCCAACCTTTACGGAGACTTCTTCACAGGCGATGCCTATGTCATCCTGAAGACGGTGCAGCTGAGGAATGGGAACCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019915_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACTCACAGCCCCACAAG
R:
CTGCACCGTCTTCAGGATGAC
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development