RnoEX0040303 @ rn6
Exon Skipping
Gene
ENSRNOG00000018991 | Gsn
Description
gelsolin [Source:RGD Symbol;Acc:1303089]
Coordinates
chr3:14467330-14484145:+
Coord C1 exon
chr3:14467330-14467415
Coord A exon
chr3:14482585-14482655
Coord C2 exon
chr3:14483941-14484145
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAGTAATTGTCTATTGTAAGTTC
3' ss Score
0.94
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TACCACCAACTCCTCTTTTCCCCGTTCTTCAGCTGCTGTCATAGCGTCTCTTCAAGGAGTGGCTCTCTTCTTGCACAGCCTGTAAG
Seq A exon
TTCTTGCAGATACAGCGCTAGGAAAAGGGGAGTAATTCAGGTGTAGGATGGAAAAACTCTTTTGTTGCTTT
Seq C2 exon
CCCAGCACCATGGTGGTGGAGCACCCCGAATTCCTGAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTTGACCTGGTGCCTGTGCCCCCCAACCTCTATGGAGACTTCTTCACGGGTGACGCCTATGTCATCCTAAAGACGGTGCAGCTGAGGAATGGGAATCTGCAGTATGACCTCCACTATTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018991_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACTCCTCTTTTCCCCG
R:
CACAGGCACCAGGTCAAACTT
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]