MmuEX0004409 @ mm9
Exon Skipping
Gene
ENSMUSG00000001864 | Aif1l
Description
allograft inflammatory factor 1-like [Source:MGI Symbol;Acc:MGI:1919598]
Coordinates
chr2:31806049-31825312:+
Coord C1 exon
chr2:31806049-31806110
Coord A exon
chr2:31820591-31820632
Coord C2 exon
chr2:31825150-31825312
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCGTGCTTGTGATTTTCAGAGA
3' ss Score
7.34
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGGGAAGGCGTTCGGTTTGCTCAAAGCCCGGCAGGAGAAGAGGCTCGAGGAGATCAATCGG
Seq A exon
AGAAATACATGGAGTTTGACCTGAATAATGAAGGCGAGATTG
Seq C2 exon
ATCTGATGTCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAGGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAATATGATGCTGGGCAAGCGGTCGGCTGTCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001864_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(6.8=28.6)
A:
PF134991=EF-hand_7=FE(15.9=100)
C2:
PF134991=EF-hand_7=PD(50.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCGTTCGGTTTGCTCAAA
R:
CCCTGTCACCTCCGAGATCAT
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types