DreEX0012280 @ danRer10
Exon Skipping
Gene
ENSDARG00000009336 | aif1l
Description
allograft inflammatory factor 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-9646]
Coordinates
chr5:33958576-33968795:+
Coord C1 exon
chr5:33958576-33958642
Coord A exon
chr5:33962060-33962101
Coord C2 exon
chr5:33968633-33968795
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACTTTAATCCACAGATA
3' ss Score
10.84
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GAGTTCATGGAAGATCAGAAGTACAGAGACGAAGAGGACTTGCCTGAAAAGCTGGATTCTTTTAAAA
Seq A exon
ATAAATATGCAGAGTTTGACCTGAACGATCAAGGGGAAATCG
Seq C2 exon
ACATGATGGGCTTGAAGCGAATGATGGAGAAGTTGGGTGTGCCAAAAACTCATCTGCAGATGAAGAAAATGATCTCTGAGGTGACAGGAGGCTGCAGTGACACCATCAACTACAGGGATTTTGTGAAAATGATGCTCGGCAAGCGATCAGCTGTTCTCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009336_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(21.3=69.6)
A:
PF134991=EF-hand_7=FE(16.1=100)
C2:
PF134991=EF-hand_7=PD(50.6=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGCCTGAAAAGCTGGA
R:
AGTTGATGGTGTCACTGCAGC
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]