BtaEX6046849 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046484 | AIF1L
Description
Bos taurus allograft inflammatory factor 1-like (AIF1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001078079]
Coordinates
chr11:101335452-101340020:+
Coord C1 exon
chr11:101335452-101335519
Coord A exon
chr11:101337983-101338024
Coord C2 exon
chr11:101339858-101340020
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTGTGATTTCCAGAGA
3' ss Score
8.49
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGTTCCTCTGCGACCAAAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTCACAGCCTTTAAAG
Seq A exon
AGAAGTACATGGAGTTTGACCTGAACAATGAGGGAGAGATTG
Seq C2 exon
ATCTGATGTCTTTGAAGAGGATGATGGAGAAGCTTGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAGGTGACAGGTGGGGTCAGCGACACCATCTCCTACCGAGACTTCGTGAACATGATGCTGGGGAAGCGGTCGGCGGTCCTTAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046484-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(10.6=30.4)
A:
PF134991=EF-hand_7=FE(21.2=100)
C2:
PF134991=EF-hand_7=PD(66.7=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGAAGAGAACCTGCCGG
R:
CACCTGTCACCTCCGAGATCA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]