GgaEX0027600 @ galGal3
Exon Skipping
Gene
ENSGALG00000003840 | AIF1L
Description
NA
Coordinates
chr17:6701092-6708882:+
Coord C1 exon
chr17:6701092-6701158
Coord A exon
chr17:6706905-6706946
Coord C2 exon
chr17:6708720-6708882
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTGTCTCTTCCAGAGA
3' ss Score
11.04
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAATTTCTCTGTGACCCAAAGTTCAGTGATGAGGAAGATCTGGAGGAGAAGCTGGCAGTGTTCAAAG
Seq A exon
AGAAGTACATGGAGTTTGACCTGAACAACCAAGGCGAGATTG
Seq C2 exon
ATTTGATGTCTGTCAAAAGGATGATGGAGAAGATGGGTGTTCCAAAGACCCACCTAGAGCTGAAGAAGATGATCTCTGAGGTGACCGGAGGGGTTAGCGAGACCATTTCCTACCAGGACTTCGTTAATGTGATGCTTGGCAAACGCTCTGCTGTACTTAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003840_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(25.0=100)
A:
PF134991=EF-hand_7=FE(15.9=100)
C2:
PF134991=EF-hand_7=PD(50.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGCTGGCAGTGTTC
R:
GGAAATGGTCTCGCTAACCCC
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]