MmuEX0004405 @ mm9
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35308359-35309139:-
Coord C1 exon
chr17:35309073-35309139
Coord A exon
chr17:35308708-35308749
Coord C2 exon
chr17:35308359-35308521
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCTTTCTCGTCCAGTGA
3' ss Score
8.82
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGG
Seq A exon
TGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCG
Seq C2 exon
ATATTATGTCCTTGAAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCACCTAGAGCTGAAGAGATTAATTAGAGAGGTGTCCAGTGGCTCCGAGGAGACGTTCAGCTACTCTGACTTTCTCAGAATGATGCTGGGCAAGAGATCTGCCATCTTGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(24.4=100)
A:
PF134991=EF-hand_7=FE(15.6=100)
C2:
PF134991=EF-hand_7=PD(48.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCTGCCGTCCAAACTTG
R:
TAGCTGAACGTCTCCTCGGAG
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types