HsaEX0003282 @ hg19
Exon Skipping
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:352]
Coordinates
chr6:31583447-31584283:+
Coord C1 exon
chr6:31583447-31583513
Coord A exon
chr6:31583881-31583922
Coord C2 exon
chr6:31584121-31584283
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCCCCTCACCCAGAGA
3' ss Score
7.84
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
CAATTCCTAGACGATCCCAAATATAGCAGTGATGAGGATCTGCCCTCCAAACTGGAAGGCTTCAAAG
Seq A exon
AGAAATACATGGAGTTTGACCTTAATGGAAATGGCGATATTG
Seq C2 exon
ATATCATGTCCCTGAAACGAATGCTGGAGAAACTTGGAGTCCCCAAGACTCACCTAGAGCTAAAGAAATTAATTGGAGAGGTGTCCAGTGGCTCCGGGGAGACGTTCAGCTACCCTGACTTTCTCAGGATGATGCTGGGCAAGAGATCTGCCATCCTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(23.2=100)
A:
PF134991=EF-hand_7=FE(14.7=100)
C2:
PF134991=EF-hand_7=PD(46.3=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGCCCTCCAAACTGGA
R:
AGGGTAGCTGAACGTCTCCC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)