RnoEX0008165 @ rn6
Exon Skipping
Gene
ENSRNOG00000000853 | Aif1
Description
allograft inflammatory factor 1 [Source:RGD Symbol;Acc:61924]
Coordinates
chr20:5162072-5162801:-
Coord C1 exon
chr20:5162735-5162801
Coord A exon
chr20:5162414-5162455
Coord C2 exon
chr20:5162072-5162234
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCTTTCTCACCCAGCGA
3' ss Score
8.08
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CACTTCCTCGATGATCCCAAGTACAGCAGTGATGAGGATCTGCAGTCCAAACTGGAGGCCTTCAAGA
Seq A exon
CGAAGTACATGGAGTTTGATCTGAATGGCAATGGAGATATCG
Seq C2 exon
ATATTATGTCCTTGAAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCATCTAGAGCTGAAGAAATTAATTAGAGAGGTGTCCAGTGGCTCCGAGGAGACGTTCAGTTACTCTGACTTTCTCAGAATGATGCTGGGCAAGAGATCTGCCATCTTGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000853_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(23.9=100)
A:
PF134991=EF-hand_7=FE(15.2=100)
C2:
PF134991=EF-hand_7=PD(47.8=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGAGGATCTGCAGTCCA
R:
GAGCCACTGGACACCTCTCTA
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]