MmuEX0004405 @ mm10
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35170992-35172194:-
Coord C1 exon
chr17:35172128-35172194
Coord A exon
chr17:35171763-35171804
Coord C2 exon
chr17:35170992-35171193
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCTTTCTCGTCCAGTGA
3' ss Score
8.82
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGG
Seq A exon
TGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCG
Seq C2 exon
GATTCTGATGTATGAGGAGAAAAACAAAGAACACAAGAGGCCAACTGGTCCCCCAGCCAAGAAAGCTATCTCCGAGCTGCCCTGATTGGAGGTGGATGTCACACGGTGGGGCTGAGTGAGGAGCTTCTGATGACAGCAGCATGGAAAAAAGAAACAGTCGTGAGCCAGAGTCAGACTAAATAAATGACGCTCCTAGTGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.207 A=0.010 C2=0.714
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(24.4=100)
A:
PF134991=EF-hand_7=FE(15.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGAGGATCTGCCGTCCA
R:
CGTGTGACATCCACCTCCAAT
Band lengths:
144-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types