BtaEX6098513 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020554 | AIF1
Description
Bos taurus allograft inflammatory factor 1 (AIF1), mRNA. [Source:RefSeq mRNA;Acc:NM_173985]
Coordinates
chr23:27503695-27504990:-
Coord C1 exon
chr23:27504924-27504990
Coord A exon
chr23:27504210-27504251
Coord C2 exon
chr23:27503695-27503857
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCCCCTCATCCAGAGA
3' ss Score
8.13
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CAATTCCTGGATGATCCCAAATACAGCAGTGATGAGGACCTGCCCTCCAAACTGGAAGCCTTCAAGA
Seq A exon
AGAAATACATGGAGTTTGACCTGAATGAAGATGGAGGTATCG
Seq C2 exon
ATATCATGTCCCTGAAGCGAATGATGGAGAAACTTGGGGTTCCCAAGACCCACCTGGAGCTAAAGAAATTAATCATGGAGGTATCCAGTGGCCCTGGGGAGACTTTCAGCTACTCTGACTTTCTCAAGATGATGTTGGGCAAGAGATCTGCCATTCTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020554-'6-3,'6-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(15.7=47.8)
A:
PF134991=EF-hand_7=FE(20.0=100)
C2:
PF134991=EF-hand_7=PD(62.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCTGCCCTCCAAACT
R:
TAGCTGAAAGTCTCCCCAGGG
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]