MmuEX0004406 @ mm9
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35307937-35308749:-
Coord C1 exon
chr17:35308708-35308749
Coord A exon
chr17:35308359-35308521
Coord C2 exon
chr17:35307937-35308138
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTTCCACCTTCAGATA
3' ss Score
11.84
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
TGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCG
Seq A exon
ATATTATGTCCTTGAAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCACCTAGAGCTGAAGAGATTAATTAGAGAGGTGTCCAGTGGCTCCGAGGAGACGTTCAGCTACTCTGACTTTCTCAGAATGATGCTGGGCAAGAGATCTGCCATCTTGAGAAT
Seq C2 exon
GATTCTGATGTATGAGGAGAAAAACAAAGAACACAAGAGGCCAACTGGTCCCCCAGCCAAGAAAGCTATCTCCGAGCTGCCCTGATTGGAGGTGGATGTCACACGGTGGGGCTGAGTGAGGAGCTTCTGATGACAGCAGCATGGAAAAAAGAAACAGTCGTGAGCCAGAGTCAGACTAAATAAATGACGCTCCTAGTGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.714
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(50.0=20.0)
A:
PF134991=EF-hand_7=PD(48.9=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACATGGAGTTTGATCTGA
R:
GACCCACTAGGAGCGTCATTT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types