RnoEX0008166 @ rn6
Exon Skipping
Gene
ENSRNOG00000000853 | Aif1
Description
allograft inflammatory factor 1 [Source:RGD Symbol;Acc:61924]
Coordinates
chr20:5161356-5162801:-
Coord C1 exon
chr20:5162735-5162801
Coord A exon
chr20:5162072-5162234
Coord C2 exon
chr20:5161356-5161549
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTTCCACCTTCAGATA
3' ss Score
11.84
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
CACTTCCTCGATGATCCCAAGTACAGCAGTGATGAGGATCTGCAGTCCAAACTGGAGGCCTTCAAGA
Seq A exon
ATATTATGTCCTTGAAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCATCTAGAGCTGAAGAAATTAATTAGAGAGGTGTCCAGTGGCTCCGAGGAGACGTTCAGTTACTCTGACTTTCTCAGAATGATGCTGGGCAAGAGATCTGCCATCTTGAGAAT
Seq C2 exon
GATTCTGATGTATGAGGAGAAAAACAAAGAACACCAGAAGCCAACTGGTCCCCCAGCCAAGAAAGCTATTTCTGAGTTGCCCTAATTGGAGGTGGATATAACACGGTGGGACCGAGGACCTTCTAATGACAGCAGCATGGGAAAAGAAGAAGCAGTTGTGAGCCAGAGTCAAACTAAATAAATAATGCTCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000853_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.018 C2=0.714
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(23.9=100)
A:
PF134991=EF-hand_7=PD(47.8=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCTCGATGATCCCAAGT
R:
AGTTTGACTCTGGCTCACAACTG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]