DreEX0012281 @ danRer10
Exon Skipping
Gene
ENSDARG00000009336 | aif1l
Description
allograft inflammatory factor 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-9646]
Coordinates
chr5:33962060-33975349:+
Coord C1 exon
chr5:33962060-33962101
Coord A exon
chr5:33968633-33968795
Coord C2 exon
chr5:33973627-33975349
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTGATGGTTTTCTTTGCAGACA
3' ss Score
10.13
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATAAATATGCAGAGTTTGACCTGAACGATCAAGGGGAAATCG
Seq A exon
ACATGATGGGCTTGAAGCGAATGATGGAGAAGTTGGGTGTGCCAAAAACTCATCTGCAGATGAAGAAAATGATCTCTGAGGTGACAGGAGGCTGCAGTGACACCATCAACTACAGGGATTTTGTGAAAATGATGCTCGGCAAGCGATCAGCTGTTCTCAAACT
Seq C2 exon
GGTTATGATGTTTGAAGACAAAGCTAATGGGTCCAGCTGTAAGCCTGATGGGCCTCCACCCAAACGTGACATCACCAGCCTACCATAGACCAGTGGAGATGAATATGGTCGACGTCCCTACATTCGCAAATCCCGTCCATTTAACATTAGGGACTAGGTTTCTATAGCCTTACCTAGAAACTTTTTTTGCCAAGATCCAGGGAAAATCTTAGTTCATAGATGGTCAAACTGAAGAAAAAAAAAAAAGTGAAAGATGTTTATATATTTGCTGTGAAAAAGTCGAAGCGCAGAGTAGCTTTTTATAAGTAAACAAATGTATATATTTATATGAGAAGTGTTTTTGAATAGTGTTTGCAAGCACAAATCTTGTGAGTGAAGTACTAGTGAAGTTTAGTGTACTAAGTTTAAGGTTTATGGGATGACAATTAGCTTGCAAGAGATTTTGCGAATTAAGTTTGCGAAGTAAGATTTTTCATCTTTCCCCAAAGTGTGTGCTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009336_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.690
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(16.1=100)
A:
PF134991=EF-hand_7=PD(50.6=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGTTTGACCTGAACGA
R:
AGATTTTCCCTGGATCTTGGCA
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]