HsaEX0003284 @ hg19
Exon Skipping
Gene
ENSG00000126878 | AIF1L
Description
allograft inflammatory factor 1-like [Source:HGNC Symbol;Acc:28904]
Coordinates
chr9:133989964-133998539:+
Coord C1 exon
chr9:133989964-133990005
Coord A exon
chr9:133993143-133993305
Coord C2 exon
chr9:133995622-133998539
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTTTTCCCCCGGCAGACC
3' ss Score
10.5
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AGAAGTACATGGAGTTTGACCTGAACAATGAAGGCGAGATTG
Seq A exon
ACCTGATGTCTTTAAAGAGGATGATGGAGAAGCTTGGTGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCAGAGGTGACAGGAGGGGTCAGTGACACTATATCCTACCGAGACTTTGTGAACATGATGCTGGGGAAACGGTCGGCTGTCCTCAAGTT
Seq C2 exon
AGTCATGATGTTTGAAGGAAAAGCCAACGAGAGCAGCCCCAAGCCAGTTGGCCCCCCTCCAGAGAGAGACATTGCTAGCCTGCCCTGAGGACCCCGCCTGGACTCCCCAGCCTTCCCACCCCATACCTCCCTCCCGATCTTGCTGCCCTTCTTGACACACTGTGATCTCTCTCTCTCTCATTTGTTTGGTCATTGAGGGTTTGTTTGTGTTTTCATCAATGTCTTTGTAAAGCACAAATTATCTGCCTTAAAGGGGCTCTGGGTCGGGGAATCCTGAGCCTTGGGTCCCCTCCCTCTCTTCTTCCCTCCTTCCCCGCTCCCTGTGCAGAAGGGCTGACATCAAACCAAAAACTAGAGGGGGCAGGGCCAGGGCAGGGAGGCTTCCAGCCTGTGTTCCCCTCACTTGGAGGAACCAGCACTCTCCATCCTTTCAGAAAGTCTCCAAGCCAAGTTCAGGCTCACTGACCTGGCTCTGACGAGGACCCCAGGCCACTCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126878_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.681
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(19.6=91.7)
A:
PF134051=EF-hand_6=PD(58.1=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGAACAATGAAGGCGA
R:
TGATGAAAACACAAACAAACCCTCA
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)