GgaEX1007153 @ galGal4
Exon Skipping
Gene
ENSGALG00000028635 | AIF1L
Description
allograft inflammatory factor 1-like [Source:HGNC Symbol;Acc:HGNC:28904]
Coordinates
chr17:6086702-6091444:+
Coord C1 exon
chr17:6086702-6086743
Coord A exon
chr17:6087864-6088026
Coord C2 exon
chr17:6089408-6091444
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTGATGCCTCACTTTTGCAGATT
3' ss Score
9.9
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AGAAGTACATGGAGTTTGACCTGAACAACCAAGGCGAGATTG
Seq A exon
ATTTGATGTCTGTCAAAAGGATGATGGAGAAGATGGGTGTTCCAAAGACCCACCTAGAGCTGAAGAAGATGATCTCTGAGGTGACCGGAGGGGTTAGCGAGACCATTTCCTACCAGGACTTCGTTAATGTGATGCTTGGCAAACGCTCTGCTGTACTTAAACT
Seq C2 exon
GGTCATGATGTTTGAAGGAAAAGCCAATGAAAGCAACCCAAAACCTTCCGGTCCACCTCCGGAGAGAGATATAGCCAGCCTCCCTTGAAGAGGACAGGCTGGAAAATTGGCACTGTTTGCTTTGCTGGTCTGTAACAGAGGTTACCTGTGCTTTGTTACTCTTTACTGTGAACAGTCCTAGTTTTCAACTAACCTGCCTTAGAGGAACAGCAAGGGAAGCCGGTAACCCCAGCTGGCATCTTTCTGCAGCATCCCTTAGCTAACTTGATTTTCTAGACAGAAGCTGTAGCACCAAGTATAATGTGAGACCAAAAACAAAACAAAACAAAAAAAAAGAAATCCTGTGATCTTAACTCTTTCCTCTGCCCTTCTTGCATTTCTCAGCTAAGAAGGAGCTTTCCACCCAGCTGATGGATTCAGAGCTGTGCTTGTCACAACAGGTTCCTGAAGAGCCTTGCTATCAGATAGCGGCTTCACGGGTGCAAATAAGTGCCTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028635_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.724
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(15.9=100)
A:
PF134991=EF-hand_7=PD(50.0=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCTGAACAACCAAGGCG
R:
CCCTTGCTGTTCCTCTAAGGC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]