BtaEX6046848 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046484 | AIF1L
Description
Bos taurus allograft inflammatory factor 1-like (AIF1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001078079]
Coordinates
chr11:101337983-101343787:+
Coord C1 exon
chr11:101337983-101338024
Coord A exon
chr11:101339858-101340020
Coord C2 exon
chr11:101343421-101343787
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTTCTCCTCTGGCAGATC
3' ss Score
9.98
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGAAGTACATGGAGTTTGACCTGAACAATGAGGGAGAGATTG
Seq A exon
ATCTGATGTCTTTGAAGAGGATGATGGAGAAGCTTGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAGGTGACAGGTGGGGTCAGCGACACCATCTCCTACCGAGACTTCGTGAACATGATGCTGGGGAAGCGGTCGGCGGTCCTTAAGCT
Seq C2 exon
AGTCATGATGTTTGAAGGAAAAGCCAACGAAGGCAGCTCCAAGCCAGTCGGGCCCCCTCCAGAGAGAGACATCGCCAGCCTGCCCTGAGGAGCCCTGCCTGGACCTCCTCGCCCTCCCCACTCTCTTCCTCCCTCCTGATCTCACCCTTCGTGACTCACTGTGACCTCTTATTCATTTTGTTTGGTCGTCGTGTGTTTGTTTTATCAGCAGAATCAGTGATCTCTTTGTATAGCACAAATGATCTGCCTTAAAGGGGCCCTGGGTTGGGGAGTCCAGATCGCCTCCCTCTCTTTTTCCTTGCGTCTCCCCTCCCTGTGCAGAAGGGCTCACATTAAACCAAAAACCAGACGGAACAGGGCCAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046484-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.690
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(21.2=100)
A:
PF134991=EF-hand_7=PD(66.7=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTACATGGAGTTTGACCTGA
R:
ACAAACACACGACGACCAAAC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]