MmuEX6100455 @ mm10
Exon Skipping
Gene
ENSMUSG00000001864 | Aif1l
Description
allograft inflammatory factor 1-like [Source:MGI Symbol;Acc:MGI:1919598]
Coordinates
chr2:31965071-31973442:+
Coord C1 exon
chr2:31965071-31965112
Coord A exon
chr2:31969630-31969792
Coord C2 exon
chr2:31970903-31973442
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTACTTTTCCTCCTGGCAGATC
3' ss Score
11.53
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGAAATACATGGAGTTTGACCTGAATAATGAAGGCGAGATTG
Seq A exon
ATCTGATGTCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAGGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAATATGATGCTGGGCAAGCGGTCGGCTGTCCTCAAGCT
Seq C2 exon
GGTCATGATGTTTGAAGGAAAAGCCAACGAGAGCAGCCCGAAGCCAGCTGGCCCACCTCCAGAGCGAGACATCGCCAGCCTGCCTTGAGGACCCACCCGGACCTTCCGGGCTGCCATCCCTGCCCCTGCCTCTCCCTCTGCGCTCTGCCATCTTGACTCATTGTGTTAGGTCTCCTGGGTTATGCCCCAGTGGACTCATTTTTTTTTTTTCTCTATGTAAGCACATGTTACCTGACTTAATGAGGCTGGGAATCCCGAGCCTCAGGCCCCTCTGCTCCCTGCTGCTCTGCCCTCTTTGTACAAAAGGGCTAACATCAAACCAAAAACTGGAGAGGGCAGGGAGGCTGCAAACCTCGTTCCCATGTTTGAAGAGGGCCTGTCCGTCAGTTCATCTTTCTCAGCTTCTAAATTAAATTCAGGCTGCAAGCTGCTCTCGGAAGATCCAGAGCAGGCACAGAGCTCCAGGGCTCCCTAGTGTCTTAGGGACATGCTTCCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001864-'8-15,'8-14,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.716
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(15.9=100)
A:
PF134991=EF-hand_7=PD(50.0=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATACATGGAGTTTGACCTGA
R:
AAAAATGAGTCCACTGGGGCA
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types