RnoEX0008167 @ rn6
Exon Skipping
Gene
ENSRNOG00000009951 | Aif1l
Description
allograft inflammatory factor 1-like [Source:RGD Symbol;Acc:1305081]
Coordinates
chr3:9237944-9248069:-
Coord C1 exon
chr3:9248028-9248069
Coord A exon
chr3:9243062-9243224
Coord C2 exon
chr3:9237944-9240520
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTCCTCCTGGCAGATC
3' ss Score
12.22
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGAAATATATGGAGTTTGACCTGAACAATGAAGGCGAGATTG
Seq A exon
ATCTGATGTCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAAGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAACATGATGCTGGGCAAGCGATCAGCTGTCCTCAAGCT
Seq C2 exon
GGTCATGATGTTTGAAGGAAAAGCCAACGAGAGCAGCCCAAAGCCAGCTGGCCCACCTCCAGAAAGAGACATTGCCAGCCTGCCTTGAAGACCCACCCAGACCTTCTGGGCTGCCATCCCTGCCCCTGCCTCTCCCTCCTGCTCTCTGCTATCGTGACTCAGTGTGATATGTCTCATGCGTTATGTCCCAGAGGACTCACTTTCTTTTTCTTTTTCATTTCTTTATGTAAGCACTTGTTACCTGACTTAATGAGGCTGGGAATCCTGAGCCTCAGGCCCCTTCACTCCCTGCAGCCCTGCCCTCTCTATACAAAAGGGCTGACATCAAACCAAAAACTGGAGAGGGCAGGGAGGCTGCAAACCTCATTCCCCATGTTTGAAGAGGGTCCTGTCCAAGTCTGTTCATCTTTCAAGGTTTCTAAACTAAATTCAGGCTGCAGATTTGGTTCTGGTGGGCCCCTCCCCTTCTCCAACTCTCAGAAGATCCAGGGCTTCTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009951-'10-7,'10-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.724
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(15.9=100)
A:
PF134991=EF-hand_7=PD(50.0=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGACCTGAACAATGAAGGC
R:
AGAAAAAGAAAGTGAGTCCTCTGGG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]