HsaEX6046264 @ hg38
Exon Skipping
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:HGNC:352]
Coordinates
chr6:31616104-31617021:+
Coord C1 exon
chr6:31616104-31616145
Coord A exon
chr6:31616344-31616506
Coord C2 exon
chr6:31616816-31617021
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCCCCATCCTCTGCCCCCAGATA
3' ss Score
11.28
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGAAATACATGGAGTTTGACCTTAATGGAAATGGCGATATTG
Seq A exon
ATATCATGTCCCTGAAACGAATGCTGGAGAAACTTGGAGTCCCCAAGACTCACCTAGAGCTAAAGAAATTAATTGGAGAGGTGTCCAGTGGCTCCGGGGAGACGTTCAGCTACCCTGACTTTCTCAGGATGATGCTGGGCAAGAGATCTGCCATCCTAAAAAT
Seq C2 exon
GATCCTGATGTATGAGGAAAAAGCGAGAGAAAAGGAAAAGCCAACAGGCCCCCCAGCCAAGAAAGCTATCTCTGAGTTGCCCTGATTTGAAGGGAAAAGGGATGATGGGATTGAAGGGGCTTCTAATGACCCAGATATGGAAACAGAAGACAAAATTGTAAGCCAGAGTCAACAAATTAAATAAATTACCCCCTCCTCCAGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472-'4-10,'4-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.714
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(14.7=100)
A:
PF134991=EF-hand_7=PD(46.3=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGTTTGACCTTAATGGA
R:
TTGATCTGGAGGAGGGGGTAA
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains