BtaEX6098514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020554 | AIF1
Description
Bos taurus allograft inflammatory factor 1 (AIF1), mRNA. [Source:RefSeq mRNA;Acc:NM_173985]
Coordinates
chr23:27503183-27504251:-
Coord C1 exon
chr23:27504210-27504251
Coord A exon
chr23:27503695-27503857
Coord C2 exon
chr23:27503183-27503387
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCATCTTCTGTGCCTCCAGATA
3' ss Score
9.86
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
AGAAATACATGGAGTTTGACCTGAATGAAGATGGAGGTATCG
Seq A exon
ATATCATGTCCCTGAAGCGAATGATGGAGAAACTTGGGGTTCCCAAGACCCACCTGGAGCTAAAGAAATTAATCATGGAGGTATCCAGTGGCCCTGGGGAGACTTTCAGCTACTCTGACTTTCTCAAGATGATGTTGGGCAAGAGATCTGCCATTCTAAAAAT
Seq C2 exon
GATCCTGATGTATGAAGAGAAAGCAAGAGAACAGGAGAAGCCAACAGGTCTCCCAGCCAAGAAAGCTATCTCTGAGTTGCCCTGATTTGTGGTGAGGGAGGTGTGGTGGAATTGAAGGGGCTTCTAATGACTCCAACATAGAAAAAGAAGACAAAATTGTGAACCAGAGCCAGACTAACTTAAATAAATTATCCTCCTTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020554-'9-6,'9-3,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.429
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(20.0=100)
A:
PF134991=EF-hand_7=PD(62.9=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATACATGGAGTTTGACCTGA
R:
TTTAAGTTAGTCTGGCTCTGGTTCAC
Band lengths:
226-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]