HsaEX6063565 @ hg19
Exon Skipping
Gene
ENSG00000126878 | AIF1L
Description
allograft inflammatory factor 1-like [Source:HGNC Symbol;Acc:28904]
Coordinates
chr9:133986984-133993305:+
Coord C1 exon
chr9:133986984-133987050
Coord A exon
chr9:133989964-133990005
Coord C2 exon
chr9:133993143-133993305
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTGTGATTTCCAGAGA
3' ss Score
8.49
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGTTTCTGTGTGACCAGAAGTACAGTGATGAAGAGAACCTTCCAGAAAAGCTCACAGCCTTCAAAG
Seq A exon
AGAAGTACATGGAGTTTGACCTGAACAATGAAGGCGAGATTG
Seq C2 exon
ACCTGATGTCTTTAAAGAGGATGATGGAGAAGCTTGGTGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCAGAGGTGACAGGAGGGGTCAGTGACACTATATCCTACCGAGACTTTGTGAACATGATGCTGGGGAAACGGTCGGCTGTCCTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126878-'6-12,'6-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(10.6=30.4)
A:
PF134991=EF-hand_7=PU(19.6=91.7)
C2:
PF134991=EF-hand_7=PD(67.7=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCAGAAAAGCTCACAGC
R:
TAGTGTCACTGACCCCTCCTG
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)