RnoEX0008169 @ rn6
Exon Skipping
Gene
ENSRNOG00000009951 | Aif1l
Description
allograft inflammatory factor 1-like [Source:RGD Symbol;Acc:1305081]
Coordinates
chr3:9243062-9250498:-
Coord C1 exon
chr3:9250432-9250498
Coord A exon
chr3:9248028-9248069
Coord C2 exon
chr3:9243062-9243224
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTGTGCTTATGATTTCCAGAGA
3' ss Score
5.47
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGTTCCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTTGCGGCCTTTAAAG
Seq A exon
AGAAATATATGGAGTTTGACCTGAACAATGAAGGCGAGATTG
Seq C2 exon
ATCTGATGTCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAAGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAACATGATGCTGGGCAAGCGATCAGCTGTCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009951-'9-6,'9-4,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(25.0=100)
A:
PF134991=EF-hand_7=FE(15.9=100)
C2:
PF134991=EF-hand_7=PD(50.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGAAGAGAACCTGCCGG
R:
CCCCTGTCACTTCCGAGATCA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]