MmuINT0066468 @ mm9
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31468005-31468428:+
Coord C1 exon
chr2:31468005-31468078
Coord A exon
chr2:31468079-31468356
Coord C2 exon
chr2:31468357-31468428
Length
278 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGCTCCTCCCTTCCCTACAGCAC
3' ss Score
10.94
Exon sequences
Seq C1 exon
GGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACCACATCAAAA
Seq A exon
GTGAGTCTTCTGCCTCTGTCTCCTGGTGGAAGGTTCATCACCCAGCTAACCTCAGTCTAACTCCTCTGAAGTACTAATCCAGGTCCTGGGTGGGACCATGTTGTGTTTTCCTCTCTCTGTCCTGTCCTGTAGATCGATCACCATTCGGGGTAAAGCCCAGAGCTCGGGGGTTTCCAGTCACATGTCTTCCCAAGGGAGCACAATGCCTGGGTAGAGGGGAGTGGGTTGAGGGGGTAAGCCCTTCCTGCAGATCAACAGTGCTCCTCCCTTCCCTACAG
Seq C2 exon
CACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-Fubp3:NM_001033389:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCCTGCAGCCTTC
R:
CACAGGGGTGCTGTGGGG
Band lengths:
132-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: