RnoINT0062955 @ rn6
Intron Retention
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10226215-10226633:-
Coord C1 exon
chr3:10226560-10226633
Coord A exon
chr3:10226287-10226559
Coord C2 exon
chr3:10226215-10226286
Length
273 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTTCCTTCCTTCCCTACAGCAC
3' ss Score
11.96
Exon sequences
Seq C1 exon
GGTGCCAGCCTCGGAGCCCCTACAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCTGCACCACATCAAAA
Seq A exon
GTGAGTCTTCTGCCTCCGTCCTGGCGGAAGGTTCATCACCCGTTTAACCTCCTTGGTCCAACTGCTTTGCTGTGCTAATCCAAGTCCTGGGAGGGGCCACACTGTTTTCCTCTCTGTCCTGCCCTGTACATCGCTGATCAGTCAGAGTAAAGCCCAGAGCTGAGGGTTTCCCATCGAATGTCTTCTGGAGGGAGCACAGTGCCTGGGTAGAGGGGAGTGGGTTGAGCTGGCAGCTCTTCCTGCAGACCAACAGTGTTCCTTCCTTCCCTACAG
Seq C2 exon
CACCTTTCCCCCCAGGGCCTTCCCCAACATCGCTGCTAAAGTTAACGGGAACCCCCACAGCACCCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139:ENSRNOT00000021871:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTCGGAGCCCCTA
R:
CACAGGGGTGCTGTGGGG
Band lengths:
140-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]