BtaINT0064440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100945835-100946311:+
Coord C1 exon
chr11:100945835-100945908
Coord A exon
chr11:100945909-100946230
Coord C2 exon
chr11:100946231-100946311
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTTTCCCACTTTCTTTCAGCAC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GGGACCAGTATTGGAGCTCCTGGACCCTTTGGACAGAGCCCCTTCAGCCAGCCGCCTGCCGCACCTCATCAAAA
Seq A exon
GTGAGTCTTCCGCACCCATCTGGACTGCGAGAATTCCCTGCCCACCCAGGAGGCCCTCCTTTGCCGCTGCTTCTGGGGATGCCAGCCGGAAGCCCGGGGTGTGGGCAAGACGCATCCCTGTCATCCCTCTGGCCTGTCCATGGCTCACTGACCAGCACTGGGCTGAGGGCCTGCCCAGAGGGCAGAGGGTCCCCTGGCCCACCAGCATCCCCAGGGAGGGCTTCCCGCCCTGAGCTGGGTCAGGGAAGGGTGTCTTTTGTGAAAGCCCTTCGTATGTTGGGTCCTCAGCTCTTGTCTTTATCTGTTTCCCACTTTCTTTCAG
Seq C2 exon
CACCTTTCCTCCAAGGAGCTCAGGGTGCTTCCCAAACATTGCTGCTAAAGTGAACGGAAACCCCCATAGCGCCCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072:ENSBTAT00000017383:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development