MmuALTD0006139-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38920195-38921045:-
Coord C1 exon
chr2:38920945-38921045
Coord A exon
chr2:38920901-38920944
Coord C2 exon
chr2:38920195-38920243
Length
44 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TTATCTTTGTTTTTACACAGGGC
3' ss Score
9.74
Exon sequences
Seq C1 exon
TCGGCTCGTCGGCCTGAGGTGGGGGCCAAGCGCCCTCGAGAGTCCGCGGAGGCGTGGCTGCTCCCACACAGCAAGTGCACTACTGGAGTCCCTGGACGCAA
Seq A exon
GTAGGCCTCCCTCTCTCCCATGGCCTCCGGCGCTCTACCGCGAG
Seq C2 exon
GGCAGTGACTTTGACCTCCATACTCTTTTAAATATAGTAGATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGGCCTGAGGTGG
R:
AAGAGTATGGAGGTCAAAGTCACTG
Band lengths:
124-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: