MmuEX0003326 @ mm9
Exon Skipping
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26698023-26720499:-
Coord C1 exon
chr2:26720391-26720499
Coord A exon
chr2:26703771-26703827
Coord C2 exon
chr2:26698023-26699394
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTGTACATCCTTCCTACAGCTA
3' ss Score
9.52
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATTATCTCCCCTGGGGGTGAGTTCTCCTGTGTGCCTGAGACCTGGCCTGTGCCTAACAGCTTGCTGCACAGACACTGAACCATCCTGGGTTCTGACATGAATCTCAGAG
Seq A exon
CTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAG
Seq C2 exon
GTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTCACTGACCGTCCAGCTGATGTGCCACAGGTGATCCTGGGTGCAGGACGGCAACTGGTGGTGCTAACTGTGCGCAACTATACTCGATGGCAGGATGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCGACGCTTTCTACGTGAGGTGGATTACCTGGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGTAGCAGCCGAGAGGCCTTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTACATCCCCTGGGACAGGGGTGACTTTTACTACGGAGGAGCCTTCTTTGGGGGGTCAGTGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATGAAGCTATGATGGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(4.3=65.0)
C2:
PF034148=Glyco_transf_6=PD(76.3=99.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACAGACACTGAACCAT
R:
ATCAGCTGGACGGTCAGTGAA
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: