RnoEX0005573 @ rn6
Exon Skipping
Gene
ENSRNOG00000039906 | Abo3
Description
histo-blood group ABO system transferase 3 [Source:RGD Symbol;Acc:628609]
Coordinates
chr3:5118956-5121045:+
Coord C1 exon
chr3:5118956-5119032
Coord A exon
chr3:5119657-5119713
Coord C2 exon
chr3:5120998-5121045
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATGCCTATCCTTCCCACAGCTA
3' ss Score
10.6
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTTTCAGGAAGACCGAAATGCTACTCACTTCACCTTGGAATCCTTCCCTTCATTGTGCTTGTCTTAGTCTTCTTTGG
Seq A exon
CTATGGATTCCTGAGCCACAAAATCCAGGAATTCAGGAACCCAGGAGGTGAGACTTG
Seq C2 exon
CATGGCTACCAGGCAGACGGATGTCCAGAAAGTTGTAAGTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039906-'0-2,'0-1,3-2
Average complexity
C1
Mappability confidence:
83%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(3.6=46.2)
A:
PF034148=Glyco_transf_6=FE(5.7=100)
C2:
PF034148=Glyco_transf_6=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCAGGAAGACCGAAATGCT
R:
TTGGCACACTTACAACTTTCTGGA
Band lengths:
124-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]