HsaEX1001493 @ hg38
Exon Skipping
Gene
ENSG00000175164 | ABO
Description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr9:133259819-133276607:-
Coord C1 exon
chr9:133275962-133276607
Coord A exon
chr9:133261318-133261374
Coord C2 exon
chr9:133259819-133259866
Length
57 bp
Sequences
Splice sites
3' ss Seq
GGCACACTTCCTTTCTGCAGTTA
3' ss Score
6.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTGCTATGTTGCCCAGGCTGGAGTGCAGTGGTGCGATTTTGGTTCACTGCAACCTCCACCTCCCAAGTTCAAGCGATTCTCCTGCCTCAGCGTCCCAAGTAGCTGGGGTTACAGACTCGAGCCACCACGACCGGCTAATTTTTGTATTTTTAGTGGAGATGGAGGATTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCTGAAAGTGCTAGGATTGTAGGCATGAGCCACCGCGCCCGGCCTCGTACGGTAATTCTGTGTGATGTTTAGGGACACGTCTCGGAGCTGGCGAACTGGACTTGGGGTGGGAGGGAAAGGAAGCATTAAAGATGCCCCCAGCTTTCACGGAGATGAGAACGGTGCCCCGGGAGGGCGGGACGGGATCAGGGTCCTGTGAACGGGGTATCAGTGTAAACTCCTCTGAGAGATATCAGGAAAAGCAGGAAGAAGCCTCTGGGACCCTTCGGGAG
Seq A exon
TTACGGGGTCCTAAGCCCCAGAAGTCTAATGCCAGGAAGCCTGGAACGGGGGTTCTG
Seq C2 exon
CATGGCTGTTAGGGAACCTGACCATCTGCAGCGCGTCTCGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175164_MULTIEX1-3/11=C1-5
Average complexity
C3
Mappability confidence:
93%=100=93%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGAGATGAGAACGGTGC
R:
TCAGGTTCCCTAACAGCCATG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains