Special

MmuALTA0014809-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28404475-28405052:+
Coord C1 exon
chr2:28404475-28404676
Coord A exon
NA
Coord C2 exon
chr2:28404984-28405052
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
TGCCTCTCTACAACCAGCAGGTG
3' ss Score
4.42
Exon sequences
Seq C1 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCCCACTCCAAGTCCTGTGACCAGCTTCGGTGCAGCCCTTACCTCGGCAGCGGGGACATCACCGACGCGCTCAGTGTGCACTCAGCTGGCTCTTCCAGCTCTGATGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
Seq A exon
NA
Seq C2 exon
GTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-23-27,23-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.510 A=NA C2=0.417
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0078818=RA=PU(22.7=87.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000118966





     
                   









    
Main Skipping Isoform:
ENSMUSP00000097812





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000028170, ENSMUSP00000109526
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:135976976-135976977 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:103129867-103129935 
LOW PSI
BtaALTA0024411-1/3
(RALGDS)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr17:7450679-7450680 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTCAGCACCAGTAGCAGTGC

				
R: 
TGCTCTTGTACATGTTGCCGT

				
Band lengths: 
244-418

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"