MmuEX0025149 @ mm9
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25733377-25743668:+
Coord C1 exon
chr2:25733377-25733555
Coord A exon
chr2:25737716-25737757
Coord C2 exon
chr2:25743589-25743668
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTCCACTCTGTGTCTCCAGGCT
3' ss Score
10.21
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACCCGCGCCAAGCGCTCCCGCAGGATGGCGCGGGCCAAGCTGCCGCGCTCGCCGTCCGAGGGCAAGGCGGGTCCGGGGGACACCCCAGCCGGCGCTGCAGCCCCTGAGGAGCCACACGGGCTCAGCCCGCTACTGCCGGCCCGCGGCGGGGGCTCCGTGGGCAGCGACGTGGGCCAGAG
Seq A exon
GCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCA
Seq C2 exon
GGTCCAGGTGGAGTTCTATGTCAATGAGAACACCTTCAAAGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAAAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-'1-6,'1-5,2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.715 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCTGAGGAGCCAC
R:
CTTGAGCCGCTCTTTGAAGGT
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types