RnoEX0046211 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3325770-3336103:+
Coord C1 exon
chr3:3325770-3325924
Coord A exon
chr3:3330032-3330073
Coord C2 exon
chr3:3336024-3336103
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATCCACTCTGTGTCTCCAGGCT
3' ss Score
9.38
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGGCGCGGGCCAAGCTGCCGCGCTCACCGTCCGAGGGCAAGGCGGGTCCGGGGGACACCCCAGCCGGCTCTGCAGCCCCTGAGGAGCCGCACGGACTCAGCCCGCTACTGCCCACCCGCGGCGGGGGCTCCGTGGGCAGCGACGTGGGCCAGAG
Seq A exon
GCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCA
Seq C2 exon
GGTCCAGGTGGAATTCTATGTCAATGAGAACACCTTCAAAGAACGCCTCAAGCTGTTCTTCATCAAAAACCAGAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'1-5,'1-4,2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCCCCTGAGGAG
R:
TGAGGCGTTCTTTGAAGGTGT
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]