HsaEX0033116 @ hg19
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium channel, subfamily T, member 1 [Source:HGNC Symbol;Acc:18865]
Coordinates
chr9:138628365-138642023:+
Coord C1 exon
chr9:138628365-138628633
Coord A exon
chr9:138634618-138634659
Coord C2 exon
chr9:138641944-138642023
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATGCCCCTCTGTGTCCCCAGGCT
3' ss Score
10.69
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CCGTTCCACTGCGCGGCGGCGTGGGGAGGGCGCGGCGCGAGCTGAGATGGTTCCGCCCGGCGCCGCCCCCGCTGCCCGCCGCCCGCCGCCCGCCGCGCCGAGCGCTCCCGCAGGATGGCGCGGGCCAAGCTGCCGCGCTCGCCGTCCGAGGGCAAGGCGGGCCCGGGGGGCGCCCCAGCCGGCGCCGCAGCCCCCGAGGAGCCTCACGGGCTCAGCCCGCTGCTGCCGGCCCGCGGCGGGGGCTCCGTGGGCAGCGACGTGGGCCAGAG
Seq A exon
GCTTCCTGTAGAAGATTTCAGCCTGGACTCCTCCCTGTCTCA
Seq C2 exon
GGTCCAGGTGGAGTTCTACGTCAACGAGAACACCTTCAAGGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAAAGATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-'2-7,'2-6,3-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.692 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGAGATGGTTCCGCC
R:
ACGTAGAACTCCACCTGGACC
Band lengths:
252-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)