GgaEX0001932 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8227168-8238531:-
Coord C1 exon
chr17:8238295-8238531
Coord A exon
chr17:8231051-8231092
Coord C2 exon
chr17:8227168-8227247
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTGATGCTCTCACCCATAGGCC
3' ss Score
11.05
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTAAACTGGATGCAGTGAGGATTGCTATGTACGGGAGAGTTCAGGGGGGAAAGAGGAGGAAGTCACAGAGGCAGCCCAGGCTCGCAGGATGGCGAGAGCCAAGCTGAAGAATTCCCCTTCAGAGAGCAACTCGCATGTGAAAACTGTCCCACCAGCAACGACAGAAGATGTCCGTGGGGTGAGCCCCTTGCTGCCAGCACGGAGGATGGGCTCCTTGGGGAGCGATGTCGGACAGAG
Seq A exon
GCCCCACGCCGAGGATTTCAGCATGGATTCCTCCTTCTCGCA
Seq C2 exon
GGTGCAGGTGGAGTTCTACGTCAATGAGAACACCTTCAAGGAGCGCCTGAAGCTCTTCTTCATCAAAAACCAGAGATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'1-3,'1-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAACTGTCCCACCAGCA
R:
GCGCTCCTTGAAGGTGTTCTC
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]