GgaEX0001932 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8922496-8936105:-
Coord C1 exon
chr17:8935452-8936105
Coord A exon
chr17:8927100-8927141
Coord C2 exon
chr17:8922496-8922575
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTGATGCTCTCACCCATAGGCC
3' ss Score
11.05
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TGATAAGCATAATGCGAGCATTTGTTTTTTAAAGGAGGCAGCCAAGACAATTACATTATTTACTGAACAAAGCCGTTTTGGAGATTTCTGCACGGCGAAGGCTTTCTTAGTCATTTTGCACCAAATCCGTTGCAGCAGCAAGGCCAGAGAGTTTGCCTTGACTCCCCTCACTACCAAAATAAATGTGCAGGGCAGGATTGTTCCACTGAGCAGCTGTGAGTGGGGAGAAAGGAGAAGAAAGGAGATGGTACGTGCCGACAGCTCTAAACTGGATGCAGTGAGGATTGCTATGTACGGGAGAGTTCAGGGGGGAAAGAGGAGGAAGTCACAGAGGCAGCCCAGGCTCGCAGGATGGCGAGAGCCAAGCTGAAGAATTCCCCTTCAGAGAGCAACTCGCATGTGAAAACTGTCCCACCAGCAACGACAGAAGATGTCCGTGGGGTGAGCCCCTTGCTGCCAGCACGGAGGATGGGCTCCTTGGGGAGCGATGTCGGACAGAG
Seq A exon
GCCCCACGCCGAGGATTTCAGCATGGATTCCTCCTTCTCGCA
Seq C2 exon
GGTGCAGGTGGAGTTCTACGTCAATGAGAACACCTTCAAGGAGCGCCTGAAGCTCTTCTTCATCAAAAACCAGAGATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAACTGTCCCACCAGCA
R:
GCGCTCCTTGAAGGTGTTCTC
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]