RnoINT0078039 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3325770-3330073:+
Coord C1 exon
chr3:3325770-3325924
Coord A exon
chr3:3325925-3330031
Coord C2 exon
chr3:3330032-3330073
Length
4107 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TATCCACTCTGTGTCTCCAGGCT
3' ss Score
9.38
Exon sequences
Seq C1 exon
ATGGCGCGGGCCAAGCTGCCGCGCTCACCGTCCGAGGGCAAGGCGGGTCCGGGGGACACCCCAGCCGGCTCTGCAGCCCCTGAGGAGCCGCACGGACTCAGCCCGCTACTGCCCACCCGCGGCGGGGGCTCCGTGGGCAGCGACGTGGGCCAGAG
Seq A exon
GTAGGGACACTTGGCGGGGACCAGGACCCCGCGGCTGCGCGGGAGGGGCTTCGCATCCTTCGCATTTTGTTTAGCACGGGCTCTGCTTCCCTGCGCCTGCCGTTGCCTGTAGCCCGGGAGAGGGCGTCTTGGTGTCCCACCACCCCTTGCCTGAAGCCTGGCTTGGGGACACTTAGACCCCGGGGCCTCTTGCTTAGAGGTTGAACCTAGGGCCTTGCAAGTATGACCTGGGCTCTAGGCCAGGTGACTCTGGACCACAGTGCTCCAGGAAGCCCCATTTGAGTGGGTTTTTACTAGGGACACTAAGTAAAGATAAGCACTTTAGAAGTGAGCAGCTGAGGCCCAGGCAGGTTAGATAGCAAACTGGCTGGGGTACAGTAAAGGTATGGGTTTTGCTGAGTACCAGCATGGTGGGGCAACCAGGATGCAGGAGGCTTTTGCAAAAGGGAGACCACCCTTTTCATCCTCCTGCAAGCTGCAGGCAGGATGTGGCACCCATTTCATGGATGAGGGCACTGAGGTCTCTGCAGCAGTGAATCCCTAGCCATCGCCTGCTTGTGCCAAGAATCCTGCTGGCTGCTGCGGGGGAAATGAATCAGACCTGGCCCGGTGTGGGCACATCGTGCTCGAAGCCTGCTCTGCTAGCGATTGGGGCAGGACTGAATGGGACCAGGCCCCGCAACTTCCTGAGCACTGGCTTTTAAGGATGAACAAGAATTGGCAAGGCTTTCTGGACAGAGGGATGGTGAAACCCCTGGGTGAGGTGCCGGTGCTGGGTCAAGCCTGATGATTTGGCAACAGATGGCTGGACTAAAGTGATCACAGCACCCCCTTCTTTCCTTGCCCCGCCCCCCACTTGCACCAGTCTCTCACTAGGAAGGTTCTCACACAGGAAGGCTGCTGCTACCCTGTTCCCATTTGCCAGAAATGGCTCTTGAGGGGCCTCCCACAGCTGATGGGCAGCTCAGGCAGGAGAATAGTTAGTGCTGCTCAGGGGGCTGGGGAATGGACCCTTCTTGGCCTCTCATCTTAATGAACACAGTGGGGGTGGGAGCAGTGATCCTGGAAGCTCCCTTCCCAGCCAATCTGGCCCCATGACAGATGGGCTGCAGGCATGGCCGTTTCGCCCAGGGTTCCTCATCTCAGCCCAGAATACAACAGAGCTGTGGCCGCCTCTTCCAGGAAGCCCTCCCCACTTGCACCTCTGCATGTGGCTGCCCTCAATCCTGCAGACCACAAGCCGTGCTGCTGGCCCTTTAACAAGGACAGCCTCTCTTCCCTATATGCAGGGTCTTGCCAACCTCCTTCTGCAGAGCAGAGAGAAGGGAGCCACCTACCCAGCTGGGTCCAGGCAGCACCTGGGCCATAGCTGGCACCGTAACACCTGCTGTGAGGAGCAGATGGGAGCCAAGGCAGATCCCAGCTAAGGAGGATGAGGTAGACTGGCCCACTAGGAATCAAATTTGTTGAAGTTTCCAGGCAAGATCCTGGCCTGTGACTTGCCTTTGCCCGTTCTGTGTCTGGACTGCTGTCCAGAAAAGTCAGAGCCTGGGGCCTCCCCACCACTAGGAAGGAAGCAAGATAGAAAAGTATCTACATGGCCTCATGTATGTCCACAGTGGTGGTGTGACTGTCCACACAGTTCCTGAAACACTGCTTTCTCACAACTGCAGCAGGCTTGGGCCCTCACACCCTATCCAACCTGAACCCACTCTCTCCAGCTCCCACTGAGGCTTAGGATGGTTGAGAAATGTGAGCTGGGGAGAGGGGAACCTATTCAAAGTTTGGAAACCTAGAAAGGGCTGGGTCATTAGCAAACCTCTCACTGTCGGGTGAGAGAGCCCCTTCTAGCTCCTGGATCCACTTGACCTGGGCCCCCGGCGAGTCCTTCCCACCTGTACTTTCCGTGGCTCCCCCTCAGCGCCATCTGCTCCCTCAGGGACTGTCTGGCCAACGAGTGATGTAAGGAAGTTTTATGCCCAAGAAGGAGCTGGATGGTCAGAGGGTGGGGCCAAGTCTCTGCACAGGCACGTCAGAGGCCACACCTTAGCTATGCCCATGGGGCCAGGATTGGAGGACAACTGGAGGGGACAGAAGGAAGAAATGGTCCTAGAAGTTGTCCCTACTGGCATATATTGGGACTCTCTAGAGGCTCCAGATGACACTGGTCTATTTCATAGCCAGTAATAGGACCAAGAGAGTAGAGGTCCTGGGGTGCTGTGGTGTGTTATGGGTAGAAAGCTACAAAAGACCTAGGAGGTAGGTCTGCCCCTGAGAACAGAGGGAGTGGTTTGAAGCTCCACACACTTGTCATGGGGAGCTCCATGACGAGGGCTCCTCTATCCTTTGGCATCTCTGGGGTCTTAACTGAAGGTGTAGAGGTGGGCAGAGTCAGGGGGTGCTGCAGCGAAGCTGGGGCGGGGCCTGATGGATGTGCAGAGACCTGACTTGGCCTGGGCCCTTTCCATCCCTTACAAGGCTCCAGAGAACAGCCACTCCCATTGCTGTGTCCTCACAGGGTCTCCGCTGGGGCCACCCCTTTGAGACTGGGATAGTGACACTCTCAGTCTACTAAGGACAGAGCCCAGGAGCAGAGGCTAGGGCAAGGGTGCCAGGAATCCCCCTCCTCAGTGGCACCCTAGCCTGACCTGGTCAGTGTAGGATCAACTGTTAGCCTTACTCTGAGCTGAGCCTCCCCCACACTTGCACATCCACCACGGCTGTCCCAAATCAAAGTGCCCTGAGGATTAAGGCCCCCACCTCCCCTCCCGGCTTTTTGACCAGCCCCCAGGACTGGCTGTGTCTTCAACCTTCTTACAGCCTGAGCCTGCACTACAAGACCCCGTCTTAATACTCCCGACATCACCTACTTCCTTACCGTTCTCTAGCTCAGTGGGGCCATAGCTTCACAGCCTGTGGCTCCAAGTCTCTCAACGGCCAGCCAGATTCCCTGTTCACACTCCCATTTTCAAGATCTGTCAGGGCCTTCACAGGGCAGCTTCTCAGGCTCATGCACTGCCTTGATGTTCTCCCAAGAAGTCTCCAGCCTATCAGTCCAGTTGTAGGGGGCAGAATCTCTCCCCAGCTCCAGTTGGATCAACCTAGCATTCCAGGCTCAGGAGATGATCCCCTGGATCTTCCTTGCTGGGACTTTCTTGTCCTCCAAGTCTAGAACCTCATGGTTCCGTACTACTCCAGGATCCTGGGTCTTCCCCTGACCACCGGGTGGCTCCTCTGAGCAGCTCCCTTCCAACACCTCTCACCCTTTTTAGGCTCCCCCGTGCCCCGCTCCCTACTCTGACAGGAAGACACACCAGGGACAAGGAGGGGCTGCATAATGGAACGTGAAGCAGTATCCTGGCCTCACAGAGGTCCCAACGCAGGTTGTACAGGGGGCCTGCCGCCTGAGGTCTGCAGTAAGGAATCCCTGTTTCCTCACCTGGAAGATGGTTGCTTTGAAAATGAAGAGAGGCTTCACTGAAGTCCTTGGTTAGAGGACTGACCCAGACAGCATGCAGTCAACACTCAACATGGGCTGGTACTGCAAAGTTCCTGATGGCAGGGTAGTCTAGGGAAACTCAAGGTCAAGTTGTCAAGTTGGCCAGGCCCACACCTCAGTCACCCAGGAAGTGTCAGCTGAGTAGGAAACCAAGAGACAGGCCATCCAAAGTTTACTGTGCCCAAATGTGACCCTGGATAGGGACTACTCAGCTGGCTTCAGCTTCCTCGGCTAGTGTTACTGTAAGGGTCACTGTCTCACAAAGATACCTGAGATAGGCTTAACACTGAGTGGGAGAGAGACAGATCCTTGTATCTTGGCTAAAGGCAGGGTCCTGTCCTCCCTGTGATTGCCACTCCTTCTGGCCTGCATGTGCCAGACGTGTGGTCTCTGCTGCTTTCTCCCACATGGAGTGGTAGACCTGGCTTCCATCTGCCTTGCATGCTAGGCTGCCTGTCCTGACAATACCTATCATGCCTGAGGCTTCACAGTCACAGGTATGGGGACTTCAGGTGTACCCCATTACTCTGGGATACTGCCTGGAGCCCTACTATGGTCCTGGAGCCCCATCCACCTTCTATGTTGATGTATCCACTCTGTGTCTCCAG
Seq C2 exon
GCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]