GgaINT0123751 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8927100-8935600:-
Coord C1 exon
chr17:8935452-8935600
Coord A exon
chr17:8927142-8935451
Coord C2 exon
chr17:8927100-8927141
Length
8310 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TGTGATGCTCTCACCCATAGGCC
3' ss Score
11.05
Exon sequences
Seq C1 exon
ATGGCGAGAGCCAAGCTGAAGAATTCCCCTTCAGAGAGCAACTCGCATGTGAAAACTGTCCCACCAGCAACGACAGAAGATGTCCGTGGGGTGAGCCCCTTGCTGCCAGCACGGAGGATGGGCTCCTTGGGGAGCGATGTCGGACAGAG
Seq A exon
GTACTGCGGGGCTGCAGTGGTGCGTGGGCTTGGGAAGCAGGGGGGCATGCTTTGTCTTTTAAATAAGAGGGAAAGGATTCGTGCCACCAGGGGCTGGAGGGGTGGTTGGTGAAATCCTTCTGATAGCTGTGTGTGGAAGAGACACGCCAGCTCTGAAGTTCCATTATGAAACAGATAGCTGGAGCAGAAGAAAACCACTTCCTTTGAATTTTTTATAAGTATTCCTCATTGGTTTATTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTTTGTTTGCCGAAAGCATGTCTGAATGGCAGCTCTGAGACAGTAAGGCTGCTACATGATGCTGCTAACTTGTGCTGCACCTTCTCTGTGCAGTACGAGACCAAAGCTTATTTGCACCGCTAGCACCACAGTAAGCACTGTATATAAGCACCATGTTTGCAGTGATGCTTGATGATCCCCTTTCTGAGGAATGATTTATTTACAACAGAAAAAAAAAAAAAAGGCAGCCCTAGGAAATGCTGCATCCTCTCTGCAAGCACACGGCTGGTATGCACAGGAGAAAAATGTGCTGTTTTCCAGGAGGGTGGAAATGGTTTCACACTGCACCATGCTTCAGAAGAAGCTAGACCTCCTCAGTGACAAGAGGAGGCATGTGTCAGGAGTTCAGTTCTGGTTCTGTTTATTTTCTTTCTGTCATCTCTTCAGCATTTCAGCCCATCCATGCTCTCTTCTCTCTCAGCAAAATCTGCCTCACTTGTGACTGTGTGCTGTGTATCTCCTAGGATGCGATTTGGTGCTGCTTCTAGCTCTGGTTTCCAGCGCAAATTAGCACAGTAGGAAAGCTTCTGCTCATGGTGAATTTTACTTGGCTGGCTCCAGGCTGGCAGGAATTCACCACCTCAGCGTCGGGACCTTCATGCAGCTGCCGGGTGGGCCGGGGGAGTGCAGGCAGCAGGTGTGGCTGAGCGGTGCGGTGCCCATTGGGGAGGCGAGGAGGTGTGTGGAGGGCACATGCTTTGGTCTCCGGGTCTGGGAGGCAGAGTCCTGATGTGCCTGCAGAGCTCAGGTCTTCGTGTGATGGGCGATGGCACCATGGTTGGTCTTCCGGCAGGCGGACTCTTGGATCTTGTGAATCGTTGCCTTCTGATTTCATGAGCTGGGGCTTACGGGTGTGGAAGGCTGCATATGTATGGGAAGCTGCAAATGGGCATTGGGCAGGTACATTGGAACTGCATCCCTGAGCCTTGGGAGGTGTCATCACGCTTTGCCGAGCAATCTGCATCTCCTCTACTCCCAGGGCAGATTGGTTTGCTCTGGTCTTATGCCTTGTTTTCAGAAGGATTGACCCATTCTGGGGACTGAGCCCTGCTGTTAGCAGAGCCCCGGGGAGAGATCACTTCCTTCCCTCCAGCTCCCAGGCACTGCTGGTTTCCCCTCAGCACGCCCAGAGGTGCTGGAGCTGAGGAGAGGCTCATACCTGTGGCCGGGGGGCTCCTCCAAACCTATCCCAACCTGATGGGGTGGAGCATGCAAGAGGGGCTTGGTGGGCTCAGCCCAGGAGCAGGAGCTCTGTCCCCAGGGCTGGCTCCTGTGTCTCTTGGCAGGGATTGTGGCACAAGGAGCGGTGCTGGAAGGCAGGGATGGATCTGGGGCCGAGGGGGGCAATGTCCAAAAGCCACAGAGCTGCAGTTGTTAGTGGACCTGGGCCAGAAGGCTGAGAGAGCGAAGCACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGATGTTCCCAGTGATGCAAATCAGTTCTCCAGGCGGCTGAAGCCAGTGAAGTTTATTCTCACCTACTTTATTTGCCTTTTACTCTGTCTCTTAGCCACTGCAGCCTCTCAGGGCTTTTAGTGGCTCTTGGTTTCAGCAGGAGAACAGCTCTGCTGTGGTTTGGAAGTGACCGAGCAGCCCTGCAGCTCTGCACATAGGAAGCTGCGTGATGCTCACGGCTGCCCTGTACCCCACTCCGAAGGGAGCATGATATGGGGAGCTCGCTCCCATAAGAGGGAGGGATGGTGCTGGGGGAAGACTTTGGGAGGAGAAGGTGTTGAGGTGGAACAAATCACAGAAAAGTCGATTTCTGAGCTGAGCTCTCCGCGGAGCACTGCAGTGGTGCAGGCTGAGGGCTGTGTTTGGGAGGAAGCTGCTGGCAGTGTGGACATGTAAATATCTGTGCTCGGATCTCACCTTGGGGGCTGTTGATCTCTCTGCAGCACCGGACGTGCAGACGTTCTGTTGCGTTCTTATTTAAAAAAACATTTTTACAGGATAACCGTGTCCTGTTTACGCAGTAGGGGAACTTCTGGCCGCTCTGCATCCGGAGGCAAACTGATATTCTTAGGGGACAGCAAACATCCCCGTAATGGATCTGGGTTTGAAGACCTGCCCAAAAACCTTGGGGAGGGGGGGTTTGCTGCAAGGCTGGCAGCACTGCCTGTCCTCCCCAGAGCCCGGGATTGCTCCCTACAGACTGGAGGGGCACAGCCAGCCCTGAGCAGCGGGAAGCAACCACGTGCCATGGAGCTGTGATCTGACCCAGGGTGAGCTGCTCTACCACTGCTTTGGGAATTGCAGGAGCAGGAACTGGGGCTGCAGATCCAGGAGTGCTGCCACGTGAAACCTTGTGGTGCTGAGATGGTTTGATGGAGAACATTGTCATTGCGGGCTGGTTTAGGTTGGAAGGGATGGCTGGAGGAACCTCTTTCTCAGATAGAATGAGCTTTAAAGTTGAGTGAGATTGGGTCAGGTTGACTGGGGCTGGTCCTGCTAAGCTTTGGGAATCTCCCAGGATGGAGCTTTCCCGGCCTCTCCACGTGCCTATTGTAGTGCTTCATTGCTCAGGGTGAATATTTCTTCTTCATATCCAGTCAGGCTTCCCCTTGCTGCATCTCGTGACTGCTCCCTCTGTCCTTTCGCTCTGGGGAGGAGTGGGCTCCCTCTTGCCTTGTACTCAGTGGCTGAAGGCAACAATCACTTTGTTCCCTCACTTCCCCATCCTCAGGCTCCACGGTCCCACCCCCAGCCCCTCCTTGTCTGGTGGCTGGAGGTGGTTCTGGCACCAATACATGGGGCTTTGCTCCATCCATGGCACAGTGCGGGCTGGAAGCTGAGTGGCAATGGGTGAGAAACAGCAGCACACTGGTGGGCCCAGTGCTTGTTGAATGAAGAGCACTTCAGAGAGCATCAAAACCACCCAAACGTGTTTGAAAATTTAATTTCTGACTAATCAATGGCTGCTCCCCCAGGGGGCCACCAGGCATTAGCAAGCTCATCCTGTTGGATGTGTGCTTACAGCCTGATGCTCTGATGCACGGTCTGCTCTGAGCCCTGGTGCTGCTGGAGCTGTTGTTGGGGTTGTTGTGTTTGGGTTTCTCAGTGCTGGTCTCCACAGCAAGTCCCAGGTGCACATTCTACCTGCAGCTGAACACTGAACTCACTGGGATGGGGGTCAGTGAGCCAAGAGCAATGTTTTTGCACATTTCCTTCATGCAGCGCAGAGCTGTGCTGCTGCCAGCTGTAATGAAGATGGCCTGAAAAGGTGCCCAGCTCACTCCCCAGAGCTTTGCTTACGAGTTAGGGAGGGATTGGACCTATTAAGGTGCAGCAGAGACTTTTGGCTGTGCTGGGAGCGGGACTCCCCATGTCAACATGTCCTCCAGTTCCCTCCTGCAGGGTTAGGTTGGGTTTTGGTCTCATGCTGTGCTCCCCATCTTGCAGAACCCCCCACGCTCAGCAGGGAGCTGCCCCCTCCCACTCCATGCCCTACATTGGTGCTGAGCTGCAGGTGCCAAGCATCAGGAGCCCACGCTCCAAACGTGTGCTTGTGTGTTAGCCCTGCTTATTTTTAGTCCTTCATTCCCATCAGGGCCCGATGGTGTGCGGGGCTTCAGCATCGCTCCCGTGGAAGCGGCTGATCTGTGAGCTCAGCATTCCTGCAAGGTAAGGGCAGGCAGCACATATGGCTCAATGGGCTGCATTTGAGGCACTGCAGTTTCCAAGCCCCAGCCCCTCCTTTGGGTCCCCATCCCAGGGCTCTGAGTGCACTGTGAGCCGTGAGGCTGCCCCATCCCACCCTGCACACATCGTTGGCCAGACGCTGCCCGTGCTGCTCGCTTCTCCCTTCCTCTTTGTTGCTCTTTCTCCCCCTCTTTACTTTCCTTTTTCGTCTCCTCCCATCTGTCCTTCTCACATCAGGCTATTTTTGTAGATGAGTTTCTCACTGTCAATATGGTAAGAACCGTGGTGTAACTCTTGTCTTTGTAGATGTGTGCTGCTTTGGGGACCCTTCCCCAGTAGCCACCCCTCATGGTTGGCTCTGCCCTTCTGGTGTACCCTGTGCTCTCCCTATGAGCACAGACCCACTGGGATTGGAGGTTCCTTCAGCCCCAGGTGCCCCAGCCCGGCAGGCAGTGGTTGAACACCCTGAAGTGTGGCGCTGGTGGGAAAGCACTTTGAGCTCTGGTGGCTCCAGGGCCCCCCACTCGAGGCAGGGATCCTTTGCTTCAACTGACTGAGAAGTGCACAGCCAGAAGTGAATCTTAATCCTCTTCATTGATCAAAATACTTCCCAGAAAATGACAGAACAGCAGAGAGTGGCAGCGGGGTGCCCTGGCTGGGGCACAGTTGGAGTGTGCAGCCCAAGCTGGGTGCTGCAGAGGGGGCTGTGCAGTGCAGTGTGGGTGGGCAGGTATGTACTCTTGTACATAAGCAAGCCTCATTAGTTGTCTTCTGTTCTAATAATAAACCTGCCATTGTGTCTTCCCCTTAGAAGAAAGCCCTACCCTTTGTCAGGGGCTGCAGCTTGCAGATGTCAGAGCTGTCTGAAGCTGTGAAGTTTCTTTTCTTTGCTGCGCCTCTCCTTGCTCTGTGCCTTTGCTGCTCTGCAATGCAGGATGCCACCAGCCTGGCTGCTCCCTTTGTCACATCCTGGGGTGGCCGCAGCCCCTCGCAGCCCTCACCCACAGGGGCACATCCCTTCCTCCTGCCTGGCTCTGTGCCTGTGGAAGCGATACTGTGGCTGTAAGTCCATCTGCCCGTCCTTTCCCCTGTTCTGTAGTGAGCAGAACCCACCAACTCTTAAAAACTTGTTGATGTCTGGAAAACAATCCTTTCCCAGTTGGGAATTGGAGTGGATTTTAGTTTTCTTCACAAACTGCAGTGCTTCATCCGTGGCACCAGGCAGGCAGAGCTGGGAGCGCTGGGGCTGCCCATCGGCCAGGGCCCTCATTGCGGGGCCTTTTTGGGGCTGCAGCTCCACACCCCACTCTGAGACCACAGCTGCAGAGTGAGAGGAGTGTGAGGGACCGTGAAGTGCAGTGCCCCACAGCAGCTGGTGTGCAGGGCTGTGTCTGCAGGAGCTCTGCTCACTCTGTCCTCTTACCATCGGCCACCAGCTGCTGTGCATTAGGAGAAAACCAAATCACTTGCTGTTTCTTGCCCATAATGTGTCTGTGAGGCATGGATGGATGCTGTGGAAAGCCAAGTGTGAGCAGGAGCCTCAGGCAGTTCTTGCTGCTGTGGTTAATCTCATTTTCTGCAGGGATCGGGGCTGGCTGGCACAGAGCTTATTGGCTGGGACTGCCCACCCCAAAGTGTCCTGTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTCTGCTCACTGCCTTTTAGGGGATTTTGGAGAGATGTGGGTGCATTGGGCATCACCATGTGCCAAACTGCTGGACGGGGCCCTGGGGAACATGGTCTGGTGCCTGATGTGGTGGTTGGCAACCCTGCCTGCAGCAGTGGGTTGGAACTGGATGATCGTTTCGGTCCTCTCCAACCCAACCATCTATAATGCTAAGAAAGATCCCCACTGCTGGCGTGGCAACACAGCACACATCCCACCTGCACCAAGCCCCTGCAGCTCTGGGCCTATCGCTGCCTGCTGACATTGCTCCGTGTGCCATGGGGACACTGGGCGTCCCCACGGGCGTTTCAGCGCAGGGTGTGTGTCAGATGGGTAATGACAGAGGAGCAGCAAACAGAATGGTGTCACAGGGAGGCTGCTCTGATCTCTGGGTAGATGGGGGATGAGATGGCTTTCTTTTGGACATGTGTTTCAATTGAAATGAGAATTATTGCTGTTATATGGTTTGAAATATACCAGAGTGCTTTACTGCACATTTCAGACTCCTCTGTGCTTGTGCTGGTGCTGGGACCAGGGAGCACCAGGAGATGCCAGCATGAAGCCAGGCAGTGCTGGGGTGGCCTGGAGCTGCCCCAGGGCCCTCTCTCTGCATCCCACTGCCCTCATTTGTTTGCCACCCCCCATAACATTGACGCCCCACATACCCTCATCCTTCCTTCTGTTTATTTCATTTGCATTTTTATGGTCGTCAGTTGTGAGTGCAGAATGAGCTCTCCAAAGGTGCACGTGGTTCCTAGAAGCACCCCAAGCAGCACCTCGCAGAATCTAATTTCTTTGCAGAAAGTGTGAAATTGAATTCGAGATGGAGCAGTTTGTGAGACTCATCAAAGAAAACCCCCAAAAAAGCATAGAGAAAATCCCCAACAGCATAAAGAAACGTGTTTGTGTGGAGCTGAGCCCTTAGGAGAGGCACCACAAAGCATCTCTGGGTGCCCAAGGAGGGGACGTCACCGTGGCAGCGCATTCCCGGGGCTCAGTGCCAGCCCTGCTGGTCCCCCCCACAGCTGCCCGCGCTGTGCTGCACCGCCCTCACCTCCTGTGATGCTCTCACCCATAG
Seq C2 exon
GCCCCACGCCGAGGATTTCAGCATGGATTCCTCCTTCTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]