MmuINT0085839 @ mm9
Intron Retention
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25733381-25737757:+
Coord C1 exon
chr2:25733381-25733555
Coord A exon
chr2:25733556-25737715
Coord C2 exon
chr2:25737716-25737757
Length
4160 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TTTCCACTCTGTGTCTCCAGGCT
3' ss Score
10.21
Exon sequences
Seq C1 exon
GCGCCAAGCGCTCCCGCAGGATGGCGCGGGCCAAGCTGCCGCGCTCGCCGTCCGAGGGCAAGGCGGGTCCGGGGGACACCCCAGCCGGCGCTGCAGCCCCTGAGGAGCCACACGGGCTCAGCCCGCTACTGCCGGCCCGCGGCGGGGGCTCCGTGGGCAGCGACGTGGGCCAGAG
Seq A exon
GTAGGGACACTTGCGGGGACCAGGACCCCGCGGCTGCGCGGGAGGGGCTTCGCGTCGTTCGCATTTTGTTTAGCACTGGCTCTGCTCCCCCGCCTGGCGTTGCCTGTAGCCCTGGAGAGGGCGTCCTGGAGTCCCACCACCCCTTGCCTGAAGCCTGGCTTGGGGAGACTTAGACCCCGGGGCCCCTTGCTTAGTGGTTGAACCTAGGGCCTTGCAAATATGACCTGGGCTCTGAGTCAGGTGGCCCAGGGCCTTGCAAATATGACCTGGGCTCTGAGTCAGGTGGCCCTGGACCACAGTGCTCCAGGAAGCCCACTGGAGTGGGTTGAGGAGGGACACTAAGGAGAGGTAGGCACTTCAGAAGTGAGCAGCTGAGGCCCTGGCAGGCTAGATAGCAAACTGGCTGGCTGGGTTACAGTAAAGGTATGGGATTGCTGAGTACTAACTAGCATGGTGGGCAACCAGAATGCAGGAGGCCTTTGCAGAACGGAGCCCACCCTTTTCATCCTCCTGCAAGCTCCAGGCAGGATGTGGCTCCCCATTTCATGGATGAGGGCACTGAGGTCTTTGCAGCAGTGAATCCCTAGCCATCACCTGCTTGTGCCAAGAATCCTGCTGGCTGCTGTGGGGGGAAATGAATCAGACCTGGCCTGGTGTGGGCACATCGTGAGCTTGAAGCCTGTTCTGCTAGCCATTGGGGTAGGACTGAATGGGACCAGGCCAGTCAACTTCCTGAGCACTGGCTTTTAAGGGTGAACAAGAATTGGCAGGGCTTTCTGGACAGAGGGATGGTGAACCCCCTGGGTCAAGCCTGGTGGTTTGGCCATGGCTTGGCCCAACAGATGGCTGGCCTAAGGTGATCACAGCACCCCCTTCTTCCTTTACCTCCCCCATTTGCACCAGTCTCTTGGTTCTCACACAGGAAGGCTGCTGCTACGCTGTTTCCATTTACCAGAAATGGCTCTTGAGGGGCCTCCCATATCGGATGGGCAGCTCAGGCAGGAGGGTAGTTAGTGCTGCTCAGGGGCCTGGGGATGCATCCTTCTTGGCCTCTCCCTCCTAATGGACAGTTTGGTCCAGTGATCCCAGAAGCTCCCTCCCCTGCCAATCTGGCCCCATGAGAGATGGGCTGCAGGCAAGGCAGTTTTGCCCAGGCTACGCCTGAGCCCAGAGTACAACACGGCTGTGGCCACCTCTTCCAGGAAGCCCTCCCCCCACTTGCACCTCTGCATGTGGCTGCCCTTCATCCTGTAGACCACAGGCTGTGCTGCTGGCTCTTCAACAAGGATAGCCTCTCTCTCCTCTATGCAGGGTCCTTGCCAACCTCCTCTGCAAAGCAGAGAGAAGGAAGCTGCGTACCCAACCGGTCCCAGGCAGCACCTGGGCCTGCAGCTGGCATCTTAACACCTGCTGTGATGAGCAGTTGGGCGCCAAGGCAGGTCCCAGCTGGGGAGGATGAGGTGGAATGACTCGTTAGGAATTGGATTTGTTGAAGTTTCCAGGCAAGATTGTGGCCTGTGACTTGCCTTTGCCCCTGTTCTATGTCTGGACTGCTGGCCAGAAAAGTCAGAGACCTCTCCACTACTAGGAAGACAACAAGGTAGAAAAGTATCTTGATAGCCCCAACCATGTCCACATTGTGGTGTGACTGCCCACACAGTTCCTGAGACACTGCGTTTTTTTCAGAACTATAATAGGCTTGGACCCTCTCACCCCACCCAACCTGAACCCTCTTTCTCCATCTCCCACTGAGGCTTAGAATGGTTGAAAAATGTGAGCTGGGGAGAGGAGAATCTATTTCAAAGTTTGGGAACCTAGAAAGAGCTGGACCATTAGCCAACCTCTCAATGTGTCAGGTGCGAGGGCCCCTTCTAGCTCCTGGATCCACTTGACTTGGGCCCCTGGAAGTCCTTCCCACCTGTACTCCCTGTGGACTCCCCCTCAGCCCCATCTGCTTCCTTAGGGACTGGCTGAGCCAATGAGGGGTGTAAGAAAGTTGTATGCCCAAGAAGAAGGGGCTGGAAGGGTGGGGCCAAGCCTCTACGAGCTGTGCCCATGGGGCCAGGATTGGAGGACAACTGGAGAGGACAGAAGGCAGAAATGGTCCTAGAAGTTGTCCCTACTGGAATATATTGGGAATCTCTAGAGGCTCCAAATGACACTAGTGTATTTCATAGTCAGTAATAGGACCAAGAGAATAGATATCCTGGGGTGCTATGGTGGCTATGTTATGGGTAGGAAGCTACAAAAATACCCTGGGGACAGAATTTTGACAGCCTGGGCTCAAGGAGTCTCCATATCCCAGGAAGGGTGGGGAGAGGTTGATGTTCCCACAGACATTGTCATGGGGAGTTTTGTGACCAGGAATCATCTATCCGTTGACATCTCTGGGATCTTAATGTAAATGTGTAGAGGTGGGGGGAGCTGAGGATGCTGGGGTGGAGTTGAGGCAAAGCCTGATGGATGGGCAGAGGTTTGACTTGCTCTAGGCCCTCTTTCCATCATGATGCTGTGTCCTCACAGGGTCTCCACTGCAGCCACCCCTTTGAGCCTGGCATGGTGAAACTCTCAGTCTACTGGGGACAGAGCCCAGGGGTAGAGGCTGGGGCAAGAGCAACCTAGTGGCATCCCAGCCTGCTTCTGACCTGGCCAGTCTAGGATCAACTGTTAGCCTTATTTCTAAGCTGAGCCATCCCTACACTTGCACACCCAACATAGCTTTCCCAAATCCTGAGGAGTAAGGCCCCCACCTCCTGGCTTTGTGACCAACCCCTAGGGAGTATCTATGTCTTCAACCTTCTTACAGCCAACACATATCTGCCTGAACCTGTTCTCCAAGATCCCCTCTTTACACCCCCTGACATCACCTACTGCCTTACCATTCTCCACCTCAGTGGGGCCATAGCTTCACACTCTGTGGTACCAAGTTTCTCAGTAGCCAGCCAGACTCCCTGTCAGCACTCCCATTCCCAGGGTCTGTCCCTGACCATCATATGCCATAACCACCCCCCAAAGGCCAGGGCCTTCACAGAGCAGTTTCTCAGGCTCATAGATTGCCTTGATGTTCTCCCAAGAATTCTCCAGCCTGTCAGTCCAGTTGCAGGGGGCAGACTCCCCAGCCCCAGCTGCAGTCACCCCAGCATTCTTGCACTCATGAGAGGATCCCTTGGCTCTTCCTTGCTGGGACTTTCTTGTCCTCCATGTCTAGAACCTCGTGGTCCCCACAATACTCCAGGACCCTGGATCCTCCCCTGACCACCAGGTGGTTCCTCTGAACAGCTTCCATACAACAGCTGCATGGTACCTCACTCCCTGCTCTGACAGGTGGACACACCCAGGGACCACGAAGGGCTGCATACTGGAATAAGAAGCCAGATTCTGGCCTCACAGAGGTCCCAATGCAGGTTGTACAGGGTGCCCCCTGCGGTCTGCAGTGACCTTTGCTGAATCCTTGCTCCTTACCTGGAAGATCGTTGCTTTGAAAATTGAGAGAGGCTCCACTGAAGTCCTTGGTTGGAGGACTGACCCAAGACAGCATGCAGTCAACACTCAACACAGACTGCTACTGCAGAGTTCCTGACACTAGGCCCCTTCTTCATGGCAGGGTAGTCTAGGGAAACTCAAGGTTAGGTTGTCTGGAGTTGGCCAGGTCCACAACTCAGTCACCGGAGAATTATCAGCTCCAAGTAGAAAACCAAGGGGCAGGCTGTCCAAGGTTTCCTGTGCCCAAATGTACCCTGGACAGGAACTACTCAGCTGGCTTCAGCTTCCTCAGTTCTGGTGTCACTGTAAGGGTCACTGCTGGACACAGGGTCACAAAGATGCCTGAGGTAGGCTTAACCCTGAATGGGAGAGAGGCAGATCCTTGTCACTTGGCTAAAGGCAGGGTCCTGACCTCCCTGTGGTTGTCACTCCCTCTGGCCAGAGTACAGGGCCTGCATGTGCCAGCACCTGCAGTCTCTAGGGCTTTCTCCAATACAGAGGGGTAAACCTGGCTTCCACCTGCCTTGCATGCTAGACTGCCTCCCCTGACAATACCTATCATGCCTGGGGCTCCACAGGTCACAGGTATGGGGACTTCAGGTATACCCCATTACTCTGAGATACTGCCTGGAGCCCCATCCACCTTCTATGTTGATGTTTCCACTCTGTGTCTCCAG
Seq C2 exon
GCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-Kcnt1:NM_175462:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: